updated README.md

adni/README.md

@@ -7,21 +7,21 @@ Scripts for preprocessing ADNI data with fMRIPrep2.2.7lts.
 Data not openly available. Used BIDS-ified dataset on Elm.
 ## BIDS validation fixes
 Ran the following scripts to fix errors:
-1. `1_create_dataset_description.py`
+- `1_create_dataset_description.py`
     -  creates `dataset_description.json` at the root directory with minimal information
     -  BIDS version used is unknown, so specified latest version (see [discussion]( https://neurostars.org/t/what-bids-version-to-use-for-legacy-dataset/25619))
     -  fixes BIDS validation error `code: 57 DATASET_DESCRIPTION_JSON_MISSING`
 
-2. `2_create_task-rest_bold.py`
+- `2_create_task-rest_bold.py`
     - creates `task-rest_bold.json` at the root directory, detailing bold task
     - fixes BIDS validation error `code: 50 TASK_NAME_MUST_DEFINE`
 
-3. `3_create_bidsignore.sh`
+- `3_create_bidsignore.sh`
     - creates `.bidsignore` at the root and adds `*T1w_cropped.nii` to ignore these files, which are not needed
     - fixes BIDS validation error `code: 1 - NOT_INCLUDED`
     - TODO: check this also fixes error `code: 63 - SESSION_VALUE_CONTAINS_ILLEGAL_CHARACTER`, it should do
 
-3. `4_correct_slice_timing.py`
+- `4_correct_slice_timing.py`
     - halves the slice timing for sub-109S4594 (ses-20160502), which appears to be doubled (see [discussion](https://neurostars.org/t/help-with-bids-errors-66-and-75-in-legacy-dataset/25625))
     - fixes BIDS validation error `code: 66 SLICETIMING_VALUES_GREATOR_THAN_REPETITION_TIME`