update tests in readme #37
Workflow file for this run
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| name: Build and Push Docker Images | |
| on: | |
| push: | |
| branches: [develop, 'GEN*', 'gen*'] | |
| paths: | |
| - 'scripts/references/**' | |
| - '.github/workflows/build-docker-images.yml' | |
| workflow_dispatch: | |
| jobs: | |
| build_references_docker: | |
| runs-on: ubuntu-latest | |
| env: | |
| REGISTRY: ghcr.io | |
| IMAGE_NAME: sage-bionetworks/genie-bpc-pipeline | |
| permissions: | |
| contents: read | |
| packages: write | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 2 | |
| - name: Setup Docker buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Fetch the default branch (develop) for comparison | |
| run: git fetch origin develop:refs/remotes/origin/develop --depth=1 | |
| - name: Check for Changes in scripts/references | |
| id: check_changes | |
| run: | | |
| # Check for a merge base, fallback to root commit if none exists | |
| if git merge-base --is-ancestor origin/develop HEAD; then | |
| DIFF_BASE="origin/develop" | |
| else | |
| DIFF_BASE=$(git rev-list --max-parents=0 HEAD) # Use the initial commit as fallback | |
| fi | |
| # Compare changes between DIFF_BASE and HEAD | |
| if git diff --name-only $DIFF_BASE -- scripts/references | grep -q .; then | |
| echo "CHANGED=true" >> $GITHUB_ENV | |
| else | |
| echo "CHANGED=false" >> $GITHUB_ENV | |
| fi | |
| - name: Log in to GitHub Container Registry | |
| if: env.CHANGED == 'true' | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ${{ env.REGISTRY }} | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Build and Push Docker Image for scripts/references | |
| if: env.CHANGED == 'true' | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: scripts/references | |
| push: true | |
| tags: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}:references-${{ github.ref_name }} | |
| cache-from: type=registry,ref=${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}:references-${{ github.ref_name }}-cache | |
| cache-to: type=inline,mode=max | |