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add instructions for nextflow testing
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danlu1 committed Oct 24, 2024
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Expand Up @@ -53,3 +53,7 @@ Parameters should be initialized / defined with default values in the set parame
### Default processes resource requirements
Defaults for process resource requirements (CPUs / memory / time) for a process should be defined in `nextflow.config`.
### Testing
1. To test locally, you can’t use ghcr.io/sage-bionetworks/docker_image_name locally directly. You will need to pull the docker image to local and test with it.
2. To test on Sequra, go to the test_bpc_pipeline, edit the pipeline by pointing it to your feature branch then update. Doing this will allow you to select parameters from the dropdown menu directly.

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