pulled changes from develop and add cohort param to update_data_updat…

…e in main.nf
Sage-Bionetworks · Oct 23, 2024 · 2df2190 · 2df2190
1 parent 158296a
commit 2df2190
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/main.nf b/main.nf
@@ -101,7 +101,7 @@ workflow BPC_PIPELINE {
     run_quac_upload_report_warning(run_quac_upload_report_error.out, ch_cohort, params.production)
     merge_and_uncode_rca_uploads(run_quac_upload_report_warning.out, ch_cohort, params.production)
     // remove_patients_from_merged(merge_and_uncode_rca_uploads.out, ch_cohort, params.production)
-    update_data_table(merge_and_uncode_rca_uploads.out, ch_comment, params.production)
+    update_data_table(merge_and_uncode_rca_uploads.out, ch_cohort, ch_comment, params.production)
     update_date_tracking_table(update_data_table.out, ch_cohort, ch_comment, params.production)
     run_quac_table_report(update_date_tracking_table.out, ch_cohort, params.production)
     run_quac_comparison_report(run_quac_table_report.out, ch_cohort, params.production)