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@SchapiroLabor

Schapiro Lab

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  1. histoCAT histoCAT Public

    Histology Topography Cytometry Analysis Toolbox

    MATLAB 66 23

  2. micronuclAI micronuclAI Public

    Automated identification of micronuclei for chromosomal instability (CIN) quantification.

    Jupyter Notebook 8 1

  3. Background_subtraction Background_subtraction Public

    Background subtraction for COMET platform

    Python 6 3

  4. macsima2mc macsima2mc Public

    utitilies for macsima image sets

    Python 4 1

  5. mi_spatialomics mi_spatialomics Public

    Data analysis for “Spatial omics of acute myocardial infarction reveals a novel mode of immune cell infiltration”

    Jupyter Notebook 2 1

  6. Segmentation_prep Segmentation_prep Public

    Image preprocessing for different segmentation approaches.

    Python 2

Repositories

Showing 10 of 42 repositories
  • macsima_pipeline Public
    SchapiroLabor/macsima_pipeline’s past year of commit activity
    Shell 1 0 0 0 Updated Feb 11, 2025
  • macsima2mc Public

    utitilies for macsima image sets

    SchapiroLabor/macsima2mc’s past year of commit activity
    Python 4 BSD-3-Clause 1 3 0 Updated Feb 11, 2025
  • micronuclAI_streamlit Public

    This repository contains a streamlit app for CIN inferences based on the micronuclAI tool

    SchapiroLabor/micronuclAI_streamlit’s past year of commit activity
    Python 2 AGPL-3.0 0 1 0 Updated Feb 11, 2025
  • micronuclAI_nf Public

    Nextflow pipeline for micronuclAI, following nf-core standards

    SchapiroLabor/micronuclAI_nf’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Feb 11, 2025
  • micronuclAI_labeling Public
    SchapiroLabor/micronuclAI_labeling’s past year of commit activity
    Python 0 AGPL-3.0 0 0 0 Updated Feb 11, 2025
  • micronuclAI-VR Public

    AG Schapiro Hiwi project

    SchapiroLabor/micronuclAI-VR’s past year of commit activity
    Jupyter Notebook 0 AGPL-3.0 0 0 0 Updated Feb 11, 2025
  • micronuclAI Public

    Automated identification of micronuclei for chromosomal instability (CIN) quantification.

    SchapiroLabor/micronuclAI’s past year of commit activity
    Jupyter Notebook 8 AGPL-3.0 1 1 0 Updated Feb 11, 2025
  • mask2bbox Public

    Useful tools for converting segmentation masks into bounding box objects.

    SchapiroLabor/mask2bbox’s past year of commit activity
    Python 2 AGPL-3.0 1 0 0 Updated Feb 11, 2025
  • batch_cell_typing Public

    Analyze the effects of intensity batch correction algorithms on cell typing models (MAPS & XGBoost)

    SchapiroLabor/batch_cell_typing’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 31, 2025
  • mi_spatialomics Public

    Data analysis for “Spatial omics of acute myocardial infarction reveals a novel mode of immune cell infiltration”

    SchapiroLabor/mi_spatialomics’s past year of commit activity
    Jupyter Notebook 2 MIT 1 0 1 Updated Jan 25, 2025
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