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Merge pull request #33 from ScilifelabDataCentre/develop
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Freya 960 (#32)
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@misterabdullahAziz
misterabdullahAziz authored Nov 7, 2024
2 parents b6f9072 + c1473fd commit 6a3317c
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7 changes: 7 additions & 0 deletions content/forms/_index.md
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---
title: Swedish COVID-19 Sample Collection Database
---

- [Add a new collection to the Swedish COVID-19](/forms/add_collection)
- [Add a new biobank to the Swedish COVID-19](/forms/add_biobank)

19 changes: 19 additions & 0 deletions content/forms/add_biobank.md
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---
title: Add a new biobank to the Swedish COVID-19 Sample Collection database
toc: false
recaptcha: true
---

The form below can be used to add a new biobank to the Swedish COVID-19 Sample Collection database which is part of the Swedish national COVID-19 data portal. All information provided in the form below will be displayed on the page of the biobank in the registry. Please fill in as many fields as possible so that the researchers have a good idea about what they can expect from the biobank.

Note that we distinguish between _biobanks_ and _collections within biobanks_. Even if a biobank has a single collection, you should fill out both the form for adding a new biobank and the form for adding a new collection. If you would like to add a collection to a biobank that has already been registered, please fill out [the form for submitting a collection instead](/forms/add_collection/).

{{< add_biobank_form >}}

#### Personal data policy

The personal data you provide in this form, your name, email address and phone number, will be used to maintain the Swedish COVID-19 Sample Collection database where information about biobanks and sample collections relevant for COVID-19 research will be made available. The registry will be a part of the [Swedish COVID-19 Data Portal](https://covid19dataportal.se/). The Data Portal is a service run by the SciLifeLab Data Centre on assignment from Vetenskapsrådet. It serves to address [the government assignment to VR](https://www.regeringen.se/regeringsuppdrag/2020/05/uppdrag-om-svensk-samordning-och-deltagande-i-eu-kommissionens-covid-19-dataplattform/) to participate in the European open data platform for COVID-19 research.

The information you provide will be processed for research purposes, i.e. using the lawful basis of public interest and following the Regulation (EU) 2016/679 of the European Parliament and of the Council of 27 April 2016 (General Data Protection Regulation) on the protection of natural persons about the processing of personal data and on the free movement of such data.

The following parties will have access to processing your personal data: SciLifeLab Data Centre, Uppsala University and Biobank Sverige, Region Uppsala. Your personal data will be deleted when no longer needed, or when stipulated by the archival rules for the university as a government authority. If you want to update or remove your personal data please contact the controller SciLifeLab Data Centre at Uppsala University using <[email protected]>.
19 changes: 19 additions & 0 deletions content/forms/add_collection.md
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---
title: Add a new collection to the Swedish COVID-19 Sample Collection database
toc: false
recaptcha: true
---

The form below can be used to add a new collection to the Swedish COVID-19 Sample Collection database which is part of the Swedish national COVID-19 data portal. All information provided in the form below will be displayed on the page of the collection in the registry. Please fill in as many fields as possible so that the researchers have a good idea about what they can expect from the collection.

Note that we distinguish between _biobanks_ and _collections within biobanks_. Even if a biobank has a single collection, you should fill out both the form for adding a new biobank and the form for adding a new collection. If you would like to add a new biobank, please fill out [the form for adding a new biobank](/forms/add_biobank/). The portal team will add new biobanks as quickly as possible after receiving that form. However, in order to prevent delays, please specify the 'new' biobank name by selecting 'other (please specify)' in the biobank name list and type the biobank name in the box that appears.

{{< add_collection_form >}}

#### Personal data policy

The personal data you provide in this form, your name, email address and phone number, will be used to maintain the Swedish COVID-19 Sample Collection database where information about biobanks and sample collections relevant for COVID-19 research will be made available. The registry will be a part of the [Swedish Pathogens Portal](https://pathogens.se/). The Data Portal is a service run by the SciLifeLab Data Centre on assignment from Vetenskapsrådet. It serves to address [the government assignment to VR](https://www.regeringen.se/regeringsuppdrag/2020/05/uppdrag-om-svensk-samordning-och-deltagande-i-eu-kommissionens-covid-19-dataplattform/) to participate in the European open data platform for COVID-19 research.

The information you provide will be processed for research purposes, i.e. using the lawful basis of public interest and following the Regulation (EU) 2016/679 of the European Parliament and of the Council of 27 April 2016 (General Data Protection Regulation) on the protection of natural persons about the processing of personal data and on the free movement of such data.

The following parties will have access to processing your personal data: SciLifeLab Data Centre, Uppsala University and Biobank Sverige, Region Uppsala. Your personal data will be deleted when no longer needed, or when stipulated by the archival rules for the university as a government authority. If you want to update or remove your personal data please contact the controller SciLifeLab Data Centre at Uppsala University using <[email protected]>.
3 changes: 2 additions & 1 deletion layouts/index.html
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</tr>
</thead>
<tbody>
{{ range sort .Site.RegularPages ".Parent.Params.name" "asc" }}
{{ $collection_pages := where .Site.RegularPages "Section" "collections" }}
{{ range sort $collection_pages ".Parent.Params.name" "asc" }}
<tr>
<td>{{ .Parent.Params.acronym }}</td>
<td><h6><a href="{{ .RelPermalink }}">{{ .Params.name }}</a></h6></td>
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3 changes: 3 additions & 0 deletions layouts/partials/footer.html
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<!-- Bootstrap icons -->
<link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/[email protected]/font/bootstrap-icons.css">

<!-- Bootstrap Bundle with Popper -->
<script src="https://cdn.jsdelivr.net/npm/[email protected]/dist/js/bootstrap.bundle.min.js" integrity="sha384-kenU1KFdBIe4zVF0s0G1M5b4hcpxyD9F7jL+jjXkk+Q2h455rYXK/7HAuoJl+0I4" crossorigin="anonymous"></script>

<!-- Analytics -->
<script>
var _paq = window._paq = window._paq || [];
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15 changes: 14 additions & 1 deletion layouts/partials/head.html
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<!-- Additional local CSS -->
<link rel="stylesheet" href="/css/style.css">

<!-- jQuery -->
<script src="https://code.jquery.com/jquery-3.5.1.js" integrity="sha256-QWo7LDvxbWT2tbbQ97B53yJnYU3WhH/C8ycbRAkjPDc=" crossorigin="anonymous"></script>
<!-- forms section -->
{{ if eq .Section "forms" }}
<!-- Select2 -->
<link href="https://cdn.jsdelivr.net/npm/[email protected]/dist/css/select2.min.css" rel="stylesheet" />
<script src="https://cdn.jsdelivr.net/npm/[email protected]/dist/js/select2.min.js"></script>
{{ end }}

{{ if .IsHome }}
<!-- DataTables -->
<script src="https://code.jquery.com/jquery-3.5.1.js" integrity="sha256-QWo7LDvxbWT2tbbQ97B53yJnYU3WhH/C8ycbRAkjPDc=" crossorigin="anonymous"></script>
<link rel="stylesheet" href="https://cdn.datatables.net/1.10.22/css/dataTables.bootstrap4.min.css">

<!-- requirements for DataTables rowGroup, for grouping rows -->
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<!-- <link href="https://cdn.datatables.net/rowgroup/1.0.2/css/rowGroup.dataTables.min.css" rel="stylesheet" type="text/css" /> -->
{{ end }}

<!-- {{ if .Params.recaptcha }} -->
<!-- reCAPTCHA for contact page and other pages where there is just one reCAPTCHA -->
<script src="https://www.google.com/recaptcha/api.js" async defer></script>
<!-- {{ end }} -->

</head>
166 changes: 166 additions & 0 deletions layouts/shortcodes/add_biobank_form.html
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<form action="https://forms.dc.scilifelab.se/api/v1/form/JR6IMI10u-gpsosh/incoming"
class="needs-validation" novalidate method="POST" accept-charset="utf-8">
<div class="accordion md-accordion" id="accordionForm" role="tablist" aria-multiselectable="true">
<div class="card">
<div class="card-header" role="tab" id="generalinfo">
<a data-bs-toggle="collapse" data-bs-parent="#accordionForm" href="#collapseGeneralInformation" aria-expanded="true"
aria-controls="collapseGeneralInformation">
<h5 class="mb-0">
General information* <i class="bi bi-caret-down-fill"></i>
</h5>
</a>
</div>
<div id="collapseGeneralInformation" class="collapse show" role="tabpanel" aria-labelledby="generalinfo"
data-bs-parent="#accordionForm">
<div class="card-body">
<div class="form-group mb-3">
<label for="name"><b>Biobank name:*</b></label>
<input type="text" class="form-control" name="name" id="name" required aria-required="true" aria-describedby="nameHelp">
<small id="nameHelp" class="form-text">
Provide the full name of the biobank (as required by
<a target="_blank" href="https://github.com/MIABIS/miabis/blob/master/Data-describing-Biobank.md">MIABIS-2.0-03</a>).
</small>
</div>
<div class="form-group mb-3">
<label for="acronym"><b>Biobank acronym:</b></label>
<input type="text" class="form-control" name="acronym" id="acronym" aria-describedby="acronymHelp">
<small id="acronymHelp" class="form-text">
Biobank acronym (as required by
<a target="_blank" href="https://github.com/MIABIS/miabis/blob/master/Data-describing-Biobank.md">MIABIS-2.0-02</a>).
</small>
</div>
<div class="form-group mb-3">
<label for="juridicalPerson"><b>Juridical person:*</b></label>
<input type="text" class="form-control" name="juridicalPerson" id="juridicalPerson" required aria-required="true" aria-describedby="juridicalPersonHelp">
<small id="juridicalPersonHelp" class="form-text">
Juristic person of a biobank (as required by
<a target="_blank" href="https://github.com/MIABIS/miabis/blob/master/Data-describing-Biobank.md">MIABIS-2.0-05</a>).
</small>
</div>
<div class="form-group mb-3">
<label for="biobank_sverige"><b>Is the biobank part of Biobank Sverige?*</b></label>
<div class="form-check">
<input class="form-check-input" type="radio" name="biobank_sverige" id="yes" value="TRUE" required>
<label class="form-check-label" for="yes">Yes</label>
</div>
<div class="form-check">
<input class="form-check-input" type="radio" name="biobank_sverige" id="no" value="FALSE">
<label class="form-check-label" for="no">No</label>
</div>
<small class="form-text">The biobank belong to the Biobank Sverige network.</small>
</div>
<div class="form-group mb-3">
<label for="ivo_regnum"><b>Biobank registration number at IVO:</b></label>
<input type="text" class="form-control" name="ivo_regnum" id="ivo_regnum" aria-describedby="ivoRegNumHelp">
<small id="ivoRegNumHelp" class="form-text">
If applicable, provide the registration number of the biobank at Inspektionen för vård och omsorg.
</small>
</div>
<div class="form-group mb-3">
<label for="bbmri_id"><b>BBMRI-ERIC biobank ID:</b></label>
<input type="text" class="form-control" name="bbmri_id" id="bbmri_id" aria-describedby="bbmriIdHelp">
<small id="bbmriIdHelp" class="form-text">
If the biobank is already listed in BBMRI-ERIC, please provide its ID. These IDs are based on MIABIS 2.0 standard (ISO 3166-1 alpha-2 + underscore + biobank national ID or name), prefixed with bbmri-eric:ID: string. For example, <i>bbmri-eric:ID:SE_9999</i>.
</small>
</div>
<div class="form-group mb-3">
<label for="url"><b>Biobank homepage URL:</b></label>
<input type="url" class="form-control" name="url" id="url" aria-describedby="urlHelp">
<small id="urlHelp" class="form-text">
Biobank URL (as required by <a target="_blank" href="https://github.com/MIABIS/miabis/blob/master/Data-describing-Biobank.md">MIABIS-2.0-04</a>).
</small>
</div>
<div class="form-group mb-3">
<label for="description"><b>Biobank description:</b></label>
<textarea class="form-control" id="description" rows="3" name="description" aria-describedby="descriptionHelp"></textarea>
<small id="descriptionHelp" class="form-text">
Biobank description (as required by <a target="_blank" href="https://github.com/MIABIS/miabis/blob/master/Data-describing-Biobank.md">MIABIS-2.0-08</a>).
</small>
</div>
<div class="form-group mb-3">
<label for="logoURL"><b>Biobank logo URL:</b></label>
<input type="url" class="form-control" name="logoURL" id="logoURL" aria-describedby="logoURLHelp">
<small id="logoURLHelp" class="form-text">
If the biobank has a logotype, please provide a URL of this logo (http://..). The logo will be displayed on the page of the biobank in the registry.
</small>
</div>
</div>
</div>
</div>
<div class="card">
<div class="card-header" role="tab" id="generalContactinfo">
<a data-bs-toggle="collapse" data-bs-parent="#accordionForm" href="#collapseContactInformation" aria-expanded="true"
aria-controls="collapseContactInformation">
<h5 class="mb-0">
Contact information* <i class="bi bi-caret-down-fill"></i>
</h5>
</a>
</div>
<div id="collapseContactInformation" class="collapse show" role="tabpanel" aria-labelledby="generalContactinfo"
data-bs-parent="#accordionForm">
<div class="card-body">
<h5>Location</h5>
<div class="form-group mb-3">
<label for="address"><b>Biobank address:*</b></label>
<input type="text" class="form-control" name="address" id="address" required aria-describedby="addressHelp">
<small id="addressHelp" class="form-text">Provide the address where the biobank is located.</small>
</div>
<h5>Contact person</h5>
<div class="row mb-3">
<div class="form-group col-md-6">
<label for="first_name"><b>First name of the contact person for enquiries:*</b></label>
<input type="text" class="form-control" name="first_name" id="first_name" required aria-describedby="firstNameHelp">
<small id="firstNameHelp" class="form-text">First name of the person who handles enquiries and questions on behalf of the biobank.</small>
</div>

<div class="form-group col-md-6">
<label for="last_name"><b>Last name of the contact person for enquiries:*</b></label>
<input type="text" class="form-control" name="last_name" id="last_name" required aria-describedby="lastNameHelp">
<small id="lastNameHelp" class="form-text">Last name of the person who handles enquiries and questions on behalf of the biobank.</small>
</div>

<div class="row mb-3">
<div class="form-group col-md-6">
<label for="email"><b>E-mail of the contact person for enquiries:*</b></label>
<input type="email" class="form-control" name="email" id="email" required aria-describedby="emailHelp">
<small id="emailHelp" class="form-text">E-mail address of the person who handles enquiries and questions on behalf of the biobank.</small>
</div>

<div class="form-group col-md-6">
<label for="phone"><b>Phone number of the contact person for enquiries:</b></label>
<input type="text" class="form-control" name="phone" id="phone" aria-describedby="phoneHelp">
<small id="phoneHelp" class="form-text">Phone number of the person who handles enquiries and questions on behalf of the biobank. To be filled out according to MIABIS 2.0 including international prefix (+99999999999 form with no spaces).</small>
</div>
</div>
</div>
</div>
</div>
</div>
</div>

<div class="g-recaptcha mt-3" data-sitekey="6LfeIHUqAAAAAEZSs0q94yCkQkn_FbE1jF7Q0Lvs"></div>
<label for="g-recaptcha-response" style="display:none">Recaptcha</label>
<input type="url" id="originUrl" name="originUrl" value="" hidden aria-label="originUrl"/>
<input type='hidden' name='origin' value='add_biobank' hidden aria-label="origin">

<button type="submit" class="btn btn-secondary mt-3">Submit the form</button>
</form>

<script>
document.getElementById('originUrl').value = location.href;

var form = document.querySelector('.needs-validation');
form.addEventListener('submit', function(event){
if(form.checkValidity() === false) {
event.preventDefault();
alert("Please fill out all required fields.");
event.stopPropagation();
form.classList.add('was-validated')
}
var recaptcha = $("#g-recaptcha-response").val();
if (recaptcha === "") {
event.preventDefault();
alert("Please tick 'I'm not a robot' above the 'Submit the form' button.");
}
});
</script>
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