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@SilkeAllmannLab

Silke Allmann Research Group

Repositories for code and data produced by the research group of Silke Allmann (University of Amsterdam, SILS)

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  1. snakemake_bsaseq snakemake_bsaseq Public

    A Snakemake pipeline to perform BSA-seq to identify causal the recessive mutation(s) underlying a mutant phenotype

    Python 1

  2. pacbio_snakemake pacbio_snakemake Public

    A Snakemake pipeline to go from raw .subreads.bam PacBio Iso-Seq to assembled mRNA isoforms (FASTA format)

    Python 1

Repositories

Showing 4 of 4 repositories
  • snakemake_bsaseq Public

    A Snakemake pipeline to perform BSA-seq to identify causal the recessive mutation(s) underlying a mutant phenotype

    SilkeAllmannLab/snakemake_bsaseq’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Apr 6, 2023
  • pacbio_snakemake Public

    A Snakemake pipeline to go from raw .subreads.bam PacBio Iso-Seq to assembled mRNA isoforms (FASTA format)

    SilkeAllmannLab/pacbio_snakemake’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jul 29, 2022
  • gwas Public archive

    R-based pipeline/script to implement a Genome-Wide Association Study (GWAS) analysis based on the RAINBOWR package

    SilkeAllmannLab/gwas’s past year of commit activity
    R 5 Apache-2.0 1 0 0 Updated Nov 18, 2021
  • Manduca Public

    This repository includes the files on the Manduca sexta hexenal isomerase gene experiments

    SilkeAllmannLab/Manduca’s past year of commit activity
    R 0 0 1 0 Updated Jun 10, 2020

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