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This branch adds a new line magic called bash that can be used to execute shell commads when using your Java Kernel. This gives back the String with the output of the executed command.
I am using this Kernel to create notebooks for a Java Programming course at Universidad de Valencia (Spain).
I also have a GitHub repo (github.com/jgutie2r/jupyter-java-nbgrader.git) with the instructuctions to create container images for the instructor (using nbgrader) and students using your kernel.