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adding staramr version 0.10.0 #875

Merged
merged 2 commits into from
Feb 21, 2024
Merged

adding staramr version 0.10.0 #875

merged 2 commits into from
Feb 21, 2024

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erinyoung
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There's a new version of STARAMR!

Well, a few of them actually. Mostly, it looks like database updates and bug fixes. The most recent release "Switched to only officially supporting Python 3.7+", which made things tricky.

I copied the prior Dockerfile and made the following changes:

  • updated the base to python:3.9-slim (pip was having issues resolving dependencies in the python3.6 that gets installed with apt-get)
  • added a version to any2fasta
  • updated readme text to give current databases (found with staramr db info)
  • added CMD layer

Pull Request (PR) checklist:

  • Include a description of what is in this pull request in this message.
  • The dockerfile successfully builds to a test target for the user creating the PR. (i.e. docker build --tag samtools:1.15test --target test docker-builds/samtools/1.15 )
  • Directory structure as name of the tool in lower case with special characters removed with a subdirectory of the version number (i.e. spades/3.12.0/Dockerfile)
    • (optional) All test files are located in same directory as the Dockerfile (i.e. shigatyper/2.0.1/test.sh)
  • Create a simple container-specific README.md in the same directory as the Dockerfile (i.e. spades/3.12.0/README.md)
    • If this README is longer than 30 lines, there is an explanation as to why more detail was needed
  • Dockerfile includes the recommended LABELS
  • Main README.md has been updated to include the tool and/or version of the dockerfile(s) in this PR
  • Program_Licenses.md contains the tool(s) used in this PR and has been updated for any missing

@Kincekara Kincekara merged commit 41c57b4 into master Feb 21, 2024
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@Kincekara
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Thank you for the update!
You can check the image deployment from here: https://github.com/StaPH-B/docker-builds/actions/runs/7991761586.

@erinyoung erinyoung deleted the erin-staramr branch February 21, 2024 19:06
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2 participants