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Earlham Institute

BBSRC-supported life science research institute in Norwich, UK

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  1. KAT KAT Public

    The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.

    C++ 213 51

  2. NanoOK NanoOK Public

    Forked from richardmleggett/NanoOK

    Analysis tool for Nanopore sequencing data

    Java 33 8

  3. RAMPART RAMPART Public

    A configurable de novo assembly pipeline

    Java 28 7

  4. 361Division 361Division Public

    361 Division - Scientific Training, Education and Learning

    R 28 31

  5. kontaminant kontaminant Public

    Tool to look for contaminants, with a kmer database.

    C 15 5

  6. earlham-galaxytools earlham-galaxytools Public

    Galaxy tools and workflows developed at the Earlham Institute

    Python 14 14

Repositories

Showing 10 of 150 repositories
  • eista Public

    A single-cell spatial transcriptomics pipeline aimed at covering all analysis stages from quantification and clustering to tertiary analyses.

    TGAC/eista’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Mar 10, 2025
  • cvanmf Public Forked from apduncan/cvanmf

    (bi)crossvalidation for NMF rank selection, and visualisation/analysis tools

    TGAC/cvanmf’s past year of commit activity
    Python 1 GPL-2.0 2 0 0 Updated Mar 9, 2025
  • grassroots-service-field-trial Public

    A Grassroots service for storing the data for field trials

    TGAC/grassroots-service-field-trial’s past year of commit activity
    C 2 Apache-2.0 0 0 0 Updated Mar 8, 2025
  • grassroots-service-users-groups Public

    A service to manage the authorization of users and groups within Grassroots

    TGAC/grassroots-service-users-groups’s past year of commit activity
    C 0 Apache-2.0 0 0 0 Updated Mar 8, 2025
  • grassroots-parental-genotype-service Public

    A Grassroots service to give parental cross information for given markers

    TGAC/grassroots-parental-genotype-service’s past year of commit activity
    C 0 Apache-2.0 0 0 0 Updated Mar 8, 2025
  • grassroots-accessions-service Public

    A Grassroots service for managing and querying various different plant accessions

    TGAC/grassroots-accessions-service’s past year of commit activity
    C 0 0 0 0 Updated Mar 8, 2025
  • grassroots-service-gene-trees Public
    TGAC/grassroots-service-gene-trees’s past year of commit activity
    C 0 Apache-2.0 0 0 0 Updated Mar 8, 2025
  • grassroots-core Public

    The core libraries of the Grassroots infratructure

    TGAC/grassroots-core’s past year of commit activity
    C 1 Apache-2.0 0 0 0 Updated Mar 8, 2025
  • rfparser Public

    Parse ResearchFish publications to update CKAN

    TGAC/rfparser’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 8, 2025
  • COPO-production Public

    COPO is a Django-based platform that serves as a metadata broker to describe research data per FAIR principles. It supports community-recognised metadata standards, ensuring data is discoverable, interoperable, and accessible. Submitted data is accessible via public repositories, promoting long-term preservation and reuse across systems.

    TGAC/COPO-production’s past year of commit activity
    JavaScript 1 MIT 2 0 0 Updated Mar 7, 2025
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