Anomalizer

.coveragerc

@@ -0,0 +1,23 @@
+# .coveragerc to control coverage.py
+[run]
+branch = True
+source = c3s_sm
+omit = */_version.py
+
+[report]
+# Regexes for lines to exclude from consideration
+exclude_lines =
+    # Have to re-enable the standard pragma
+    pragma: no cover
+
+    # Don't complain about missing debug-only code:
+    def __repr__
+    if self\.debug
+
+    # Don't complain if tests don't hit defensive assertion code:
+    raise AssertionError
+    raise NotImplementedError
+
+    # Don't complain if non-runnable code isn't run:
+    if 0:
+    if __name__ == .__main__.:

.gitattributes

@@ -0,0 +1 @@
+c3s_sm/_version.py export-subst

.github/workflows/ci.yml

@@ -0,0 +1,84 @@
+# This workflow will install Python dependencies and run tests on
+# windows and linux systems with a variety of Python versions
+
+# For more information see:
+# https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
+
+name: tests
+
+on:
+  push:
+  pull_request:
+  schedule:
+    - cron: '0 0 * * *' # daily
+
+jobs:
+  build:
+    name: Build py${{ matrix.python-version }} @ ${{ matrix.os }} 🐍
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        python-version: ['3.6', '3.7', '3.8']
+        os: ["ubuntu-latest", "windows-latest"]
+
+    steps:
+      - uses: actions/checkout@v2
+        with:
+          submodules: false # does not work with self-hosted testdata
+      - name: Checkout Testdata
+        shell: bash -l {0}
+        run : |
+          git submodule init
+          git submodule update
+          ls tests/c3s_sm-test-data
+      - uses: conda-incubator/[email protected]
+        with:
+          miniconda-version: "latest"
+          auto-update-conda: true
+          python-version: ${{ matrix.python-version }}
+          environment-file: environment.yml
+          activate-environment: c3s_sm
+          auto-activate-base: false
+      - name: Print environment infos
+        shell: bash -l {0}
+        run: |
+          conda info -a
+          conda list
+          pip list
+          which pip
+          which python
+      - name: Export Environment
+        shell: bash -l {0}
+        run: |
+          mkdir -p .artifacts
+          filename=env_py${{ matrix.python-version }}_${{ matrix.os }}.yml
+          conda env export --no-builds | grep -v "prefix" > .artifacts/$filename
+      - name: Upload Artifacts
+        uses: actions/upload-artifact@v2
+        with:
+          name: os_py_environments
+          path: .artifacts/*
+      - name: Install package and test
+        shell: bash -l {0}
+        run: |
+          pip install .
+          python setup.py test
+      - name: Upload Coverage
+        shell: bash -l {0}
+        run: |
+          pip install coveralls && coveralls --service=github
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          COVERALLS_FLAG_NAME: ${{ matrix.python-version }}
+          COVERALLS_PARALLEL: true
+  coveralls:
+    name: Submit Coveralls 👚
+    needs: build
+    runs-on: ubuntu-latest
+    container: python:3-slim
+    steps:
+      - name: Finished
+        run: |
+          pip3 install --upgrade coveralls && coveralls --service=github --finish
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/pypi_release.yml

@@ -0,0 +1,41 @@
+name: pypi
+
+# This workflow uploads a release to pypi. A released must be triggered
+# via github (releases) and will include a version number tag (leading 'v'!!)
+# This will NOT repeat testing, draft a release only from tested branches!
+
+on:
+  release:
+    types: [released] # only on tagged github RELEASE, (a simple tag is not enough!)
+
+jobs:
+  publish:
+    name: Upload to Pypi 🚀
+    # needs original account (TUW-GEO) and tagged github RELEASE (tag: v*),
+    # safety measure to not release normal tags and/or releases in forks
+    if: startsWith(${{ github.ref }}, 'refs/tags/v') && startsWith(${{ github.repository }}, "TUW-GEO/")
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+        with:
+          repository: ${{ github.repository }}
+          ref: ${{ github.ref }}
+      - name: Set up Python
+        uses: actions/setup-python@v2
+        with:
+          python-version: 3.x
+      - name: Build
+        shell: bash -l {0}
+        run: |
+          python setup.py --version
+          python setup.py sdist
+          pip install wheel && python setup.py bdist_wheel
+      - name: Publish distribution to PyPI
+        uses: pypa/[email protected]
+        with:
+          skip_existing: true
+          verbose: true
+          verify_metadata: true
+          packages_dir: dist/
+          user: __token__
+          password: ${{ secrets.PYPI_API_TOKEN }} # todo: add token to github actions secrets

.gitignore

@@ -40,3 +40,5 @@ docs/api/*
 docs/_build/*
 cover/*
 MANIFEST
+
+*/_local_scripts/*

.gitmodules

@@ -1,9 +1,4 @@
-[submodule "tests/test-data/c3s_sm"]
-	path = tests/test-data/c3s_sm
-	url = https://github.com/TUW-GEO/c3s_sm
-[submodule "tests/test-data/c3s_sm-test-data"]
-	path = tests/test-data/c3s_sm-test-data
-	url = https://github.com/TUW-GEO/c3s_sm-test-data
-[submodule "tests/test-data"]
-	path = tests/test-data
-	url = https://github.com/TUW-GEO/c3s_sm-test-data
+[submodule "tests/c3s_sm-test-data"]
+	path = tests/c3s_sm-test-data
+	url = https://www.geo.tuwien.ac.at/downloads/gittd/c3s_sm-test-data.git/
+	ignore = dirty

.readthedocs.yml

@@ -0,0 +1,12 @@
+version: 2
+
+sphinx:
+  configuration: docs/conf.py
+
+formats:
+  - pdf
+
+python:
+  version: 3.7
+  install:
+    - requirements: docs/requirements.txt

AUTHORS.rst

@@ -2,4 +2,5 @@
 Developers
 ==========
 
-* tscanlon <[email protected]>
+* Tracy Scanlon <[email protected]>
+* Wolfgang Preimesberger <[email protected]>

CHANGELOG.rst

@@ -0,0 +1,32 @@
+=========
+Changelog
+=========
+
+Version 0.X (unreleased)
+========================
+
+- Allow reading and reshuffling spatial subsets (bbox)
+- Add support for new versions v201912, v202012
+- Add module to generate metadata for time series files
+
+Version 0.1.2
+=============
+
+- Update pyscaffold structure
+- Add automatic pypi deploy
+- Add option to remove time zone info from time series
+
+Version 0.1.1
+=============
+
+- Contains extended time series reader
+
+Version 0.1
+===========
+
+- Add smecv grid support
+- Add reader from images and image stacks
+- Add reshuffle module
+- Add first version of metadata module
+- Add basic documentation
+- Add unit tests for all modules

LICENSE.txt

@@ -1 +1,21 @@
-Copyright 2018 tscanlon
+The MIT License (MIT)
+
+Copyright (c) 2018 TU Wien
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

README.rst

@@ -9,6 +9,9 @@ c3s_sm
 .. image:: https://coveralls.io/repos/github/TUW-GEO/c3s_sm/badge.svg?branch=master
     :target: https://coveralls.io/github/TUW-GEO/c3s_sm?branch=master
 
+.. image:: https://badge.fury.io/py/c3s-sm.svg
+    :target: https://badge.fury.io/py/c3s-sm
+
 .. image:: https://readthedocs.org/projects/c3s_sm/badge/?version=latest
     :target: http://c3s_sm.readthedocs.io/en/latest/?badge=latest