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Do not show the candidate disease unless there is a (predicted) pathogenic variant(s) in the associated gene #651

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merged 3 commits into from
Mar 4, 2024

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@ielis ielis commented Mar 1, 2024

The PR updates the HTML and TSV report generators, to ensure we only report the candidate diseases with predicted pathogenic variant(s) in the associated gene.

This filtering is on by default, and can be turned off by including the --sdwndv flag in the CLI.

ielis added 3 commits March 1, 2024 15:15
…HTML and TSV reports, unless there is a predicted deleterious variant in the associated gene.
@ielis ielis marked this pull request as ready for review March 1, 2024 20:29
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ielis commented Mar 1, 2024

@pnrobinson this is the patch to tweak the default behavior such that only the diseases where pathogenic variant(s) are found in the associated gene are included in the HTML and TSV reports.

@ielis ielis merged commit 4809f03 into develop Mar 4, 2024
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@ielis ielis deleted the do-not-show-differentials-with-no-good-variants branch March 4, 2024 19:33
@ielis ielis restored the do-not-show-differentials-with-no-good-variants branch April 16, 2024 14:11
@ielis ielis deleted the do-not-show-differentials-with-no-good-variants branch April 16, 2024 14:13
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