Merge branch 'master' of mdgithub:TissueMAPS/TmClient

TissueMAPS · Jul 3, 2017 · 0c2ca03 · 0c2ca03
2 parents 2c49928 + 3a6791f
commit 0c2ca03
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/examples/upload-and-process-experiment.sh b/examples/upload-and-process-experiment.sh
@@ -186,7 +186,7 @@ for plate_dir in "${datadir}"/plates/*; do
         fi
         acquisition_name=$(basename "$plate_name")
         tm_client acquisition -e "${name}" create -p "$plate_name" -n "$acquisition_name"
-        tm_client microscope-file -e "${name}" upload -p "$plate_name" -a "$acquisition_name" --directory "$acquisition_dir"
+        tm_client microscope-file -e "${name}" upload -p "$plate_name" -a "$acquisition_name" --directory "$acquisition_dir/microscope_images"
     done
 done
 
@@ -196,7 +196,7 @@ tm_client workflow -e "${name}" upload --file "${datadir}/workflow.yaml"
 
 # Upload jterator project description:
 
-tm_client jtproject -e "${$name}" upload --directory "${datadir}/jtproject"
+tm_client jtproject -e "${name}" upload --directory "${datadir}/jtproject"
 
 # Submit workflow: