Release 0.7.2

* Replace pdm with uv. This speeds up EOS installs by 4x.
* Use exact dependency versions in pyproject.toml

.github/workflows/docs.yml

@@ -17,22 +17,18 @@ jobs:
 
       - uses: actions/setup-python@v5
         with:
-          python-version: "3.10"
+          python-version: '3.10'
 
-      - uses: pdm-project/setup-pdm@v4
-        name: Set up PDM
+      - name: Install uv
+        uses: astral-sh/setup-uv@v5
         with:
-          python-version: "3.10"
-          allow-python-prereleases: false
-          cache: true
-          cache-dependency-path: |
-            ./pdm.lock
+          enable-cache: true
 
-      - name: Install dependencies
-        run: pdm install --group docs --no-default
+      - name: Install the project
+        run: uv sync --all-extras --dev
 
       - name: Build docs
-        run: pdm run docs-build-gh
+        run: uv run docs-build-gh
 
       - name: Deploy
         uses: JamesIves/github-pages-deploy-action@v4

docs/conf.py

@@ -10,7 +10,7 @@
 project = "eos"
 copyright = "2025, UNC Robotics"
 author = "Angelos Angelopoulos"
-release = "0.7.1"
+release = "0.7.2"
 
 extensions = [
     "sphinx.ext.autodoc",

docs/user-guide/installation.rst

@@ -14,25 +14,25 @@ We recommend a central computer that is easily accessible.
 EOS also requires a PostgreSQL database and a MinIO object storage server.
 We provide a Docker Compose file that can set up all of these services for you.
 
-1. Install PDM
+1. Install uv
 ^^^^^^^^^^^^^^
-PDM is used as the project manager for EOS, making it easier to install dependencies and build it.
+uv is used as the dependency manager for EOS. It installs dependencies extremely fast.
 
-See the `PDM documentation <https://pdm-project.org/en/latest/>`_ for more information or if you encounter any issues.
+See the `uv documentation <https://docs.astral.sh/uv/>`_ for more information or if you encounter any issues.
 
 .. tab-set::
 
     .. tab-item:: Linux/Mac
 
         .. code-block:: shell
 
-            curl -sSL https://pdm-project.org/install-pdm.py | python3 -
+            curl -LsSf https://astral.sh/uv/install.sh | sh
 
     .. tab-item:: Windows
 
         .. code-block:: shell
 
-            (Invoke-WebRequest -Uri https://pdm-project.org/install-pdm.py -UseBasicParsing).Content | py -
+            powershell -ExecutionPolicy ByPass -c "irm https://astral.sh/uv/install.ps1 | iex"
 
 2. Clone the EOS Repository
 ^^^^^^^^^^^^^^^^^^^^^^^^^^^
@@ -42,21 +42,18 @@ See the `PDM documentation <https://pdm-project.org/en/latest/>`_ for more infor
 
 3. Make a Virtual Environment
 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-We create a virtual environment to isolate the dependencies of EOS from the rest of the system. The virtual environment
-is created in a ``env`` directory inside the EOS repository directory. Feel free to use PDM to manage the virtual
-environment instead. Other sections of the documentation will assume that you are using a virtual environment located
-inside the EOS repository directory.
+We create a virtual environment to isolate the dependencies of EOS from the rest of the system.
 
 .. code-block:: shell
 
     cd eos # Navigate to the cloned repository
-    python3 -m venv env
-    source env/bin/activate
+    uv venv
+    source .venv/bin/activate
 
 4. Install Dependencies
 ^^^^^^^^^^^^^^^^^^^^^^^
 Navigate to the cloned repository and run:
 
 .. code-block:: shell
 
-    pdm install
+    uv sync

pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "eos"
-version = "0.7.1"
+version = "0.7.2"
 description = "The Experiment Orchestration System (EOS) is a comprehensive software framework and runtime for laboratory automation."
 keywords = ["automation", "science", "lab", "experiment", "orchestration", "distributed", "infrastructure"]
 authors = [
@@ -22,25 +22,25 @@ classifiers = [
 readme = "README.md"
 requires-python = ">=3.10"
 dependencies = [
-    "ray[default]~=2.42.0",
-    "typer~=0.15.1",
-    "rich~=13.9.4",
-    "jinja2~=3.1.5",
-    "PyYAML~=6.0.2",
-    "networkx~=3.4.2",
-    "sqlalchemy~=2.0.38",
-    "alembic~=1.14.1",
-    "psycopg[binary]~=3.2.3",
-    "asyncpg~=0.30.0",
-    "pydantic~=2.10.6",
-    "bofire[optimization]~=0.0.16",
-    "pandas~=2.2.3",
-    "numpy~=1.26.2",
-    "litestar[standard]~=2.14.0",
-    "minio~=7.2.15",
+    "ray[default]==2.42.0",
+    "typer==0.15.1",
+    "rich==13.9.4",
+    "jinja2==3.1.5",
+    "PyYAML==6.0.2",
+    "networkx==3.4.2",
+    "sqlalchemy==2.0.38",
+    "alembic==1.14.1",
+    "psycopg[binary]==3.2.3",
+    "asyncpg==0.30.0",
+    "pydantic==2.10.6",
+    "bofire[optimization]==0.0.16",
+    "pandas==2.2.3",
+    "numpy==1.26.2",
+    "litestar[standard]==2.14.0",
+    "minio==7.2.15",
 ]
 
-[project.optional-dependencies]
+[dependency-groups]
 dev = [
     "aiosqlite",
     "ruff",
@@ -58,26 +58,27 @@ docs = [
     "pydata-sphinx-theme",
 ]
 
-[build-system]
-requires = ["pdm-backend"]
-build-backend = "pdm.backend"
+[tool.uv]
+default-groups = ["dev", "docs"]
 
-[tool.pdm.build]
-includes = ["eos"]
+[build-system]
+requires = ["hatchling"]
+build-backend = "hatchling.build"
 
-[tool.pdm.scripts]
-test = "pytest"
-test-with-cov = "pytest --cov=eos"
-cov-report = "coverage html"
-lint = "ruff check eos tests"
-format = "black ."
-docs-build = "sphinx-build docs docs/_build"
-docs-build-gh = { shell = "sphinx-build docs docs/_build && touch docs/_build/.nojekyll" }
-docs-serve = "sphinx-autobuild docs docs/_build/ -j auto --watch eos --watch docs --port 8002"
+[tool.hatch.build.targets.wheel]
+packages = ["eos"]
 
 [project.scripts]
 eos = "eos.eos:eos_app"
 
+test = "scripts.test:main"
+test-with-cov = "scripts.test_with_cov:main"
+lint = "scripts.lint:main"
+format = "scripts.format:main"
+docs-build = "scripts.docs_build:main"
+docs-build-gh = "scripts.docs_build_gh:main"
+docs-serve = "scripts.docs_serve:main"
+
 [tool.black]
 line-length = 120
 extend-exclude = "eos/database/_migrations/versions/"

scripts/cov_report.py

@@ -0,0 +1,9 @@
+import subprocess
+
+
+def main():
+    subprocess.run(["coverage", "html"], check=True)
+
+
+if __name__ == "__main__":
+    main()

scripts/docs_build.py

@@ -0,0 +1,14 @@
+import subprocess
+from pathlib import Path
+
+
+def main():
+    docs_dir = Path("docs")
+    build_dir = docs_dir / "_build"
+
+    cmd = ["sphinx-build", str(docs_dir), str(build_dir)]
+    subprocess.run(cmd, check=True)
+
+
+if __name__ == "__main__":
+    main()

scripts/docs_build_gh.py

@@ -0,0 +1,17 @@
+import subprocess
+from pathlib import Path
+
+
+def main():
+    docs_dir = Path("docs")
+    build_dir = docs_dir / "_build"
+    nojekyll_file = build_dir / ".nojekyll"
+
+    cmd = ["sphinx-build", str(docs_dir), str(build_dir)]
+    subprocess.run(cmd, check=True)
+
+    nojekyll_file.touch(exist_ok=True)
+
+
+if __name__ == "__main__":
+    main()

scripts/docs_serve.py

@@ -0,0 +1,26 @@
+import subprocess
+from pathlib import Path
+
+
+def main():
+    docs_dir = Path("docs")
+    build_dir = docs_dir / "_build"
+
+    cmd = [
+        "sphinx-autobuild",
+        str(docs_dir),
+        str(build_dir),
+        "-j",
+        "auto",
+        "--watch",
+        "eos",
+        "--watch",
+        "docs",
+        "--port",
+        "8002",
+    ]
+    subprocess.run(cmd, check=True)
+
+
+if __name__ == "__main__":
+    main()

scripts/format.py

@@ -0,0 +1,9 @@
+import subprocess
+
+
+def main():
+    subprocess.run(["black", "."], check=True)
+
+
+if __name__ == "__main__":
+    main()

scripts/lint.py

@@ -0,0 +1,9 @@
+import subprocess
+
+
+def main():
+    subprocess.run(["ruff", "check", "eos", "tests"])
+
+
+if __name__ == "__main__":
+    main()

scripts/test.py

@@ -0,0 +1,11 @@
+import subprocess
+import sys
+
+
+def main():
+    cmd = ["pytest"] + sys.argv[1:]
+    subprocess.run(cmd, check=True)
+
+
+if __name__ == "__main__":
+    main()

scripts/test_with_cov.py

@@ -0,0 +1,9 @@
+import subprocess
+
+
+def main():
+    subprocess.run(["pytest", "--cov=eos"], check=True)
+
+
+if __name__ == "__main__":
+    main()