Update Stan (#48)

WardBrian · Dec 10, 2024 · 28e4156 · 28e4156
1 parent 3855589
commit 28e4156
Show file tree

Hide file tree

Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/Makefile b/Makefile
@@ -155,7 +155,7 @@ print-%  : ; @echo $* = $($*) ;
 STANC_DL_RETRY = 5
 STANC_DL_DELAY = 10
 STANC3_TEST_BIN_URL ?=
-STANC3_VERSION ?= nightly
+STANC3_VERSION ?= v2.36.0
 
 ifeq ($(OS),Windows_NT)
  OS_TAG := windows

diff --git a/stan b/stan
+1 −1		.github/ISSUE_TEMPLATE.md
+15 −0		RELEASE-NOTES.txt
+1 −1		lib/stan_math
+1 −5		makefile
+1 −1		src/doxygen/doxygen.cfg
+43 −0		src/stan/analyze/mcmc/check_chains.hpp
+8 −0		src/stan/analyze/mcmc/compute_effective_sample_size.hpp
+4 −232		src/stan/analyze/mcmc/compute_potential_scale_reduction.hpp
+108 −0		src/stan/analyze/mcmc/ess.hpp
+66 −0		src/stan/analyze/mcmc/mcse.hpp
+62 −0		src/stan/analyze/mcmc/rank_normalization.hpp
+50 −0		src/stan/analyze/mcmc/rhat.hpp
+58 −0		src/stan/analyze/mcmc/split_chains.hpp
+60 −0		src/stan/analyze/mcmc/split_rank_normalized_ess.hpp
+47 −0		src/stan/analyze/mcmc/split_rank_normalized_rhat.hpp
+67 −58		src/stan/io/stan_csv_reader.hpp
+19 −19		src/stan/mcmc/chains.hpp
+508 −0		src/stan/mcmc/chainset.hpp
+40 −7		src/stan/services/util/initialize.hpp
+1 −1		src/stan/version.hpp
+6 −0		src/test/test-models/good/services/test_fail.stan
+48 −0		src/test/unit/analyze/mcmc/check_chains_test.cpp
+0 −309		src/test/unit/analyze/mcmc/compute_potential_scale_reduction_test.cpp
+53 −0		src/test/unit/analyze/mcmc/ess_basic_test.cpp
+73 −0		src/test/unit/analyze/mcmc/mcse_test.cpp
+85 −0		src/test/unit/analyze/mcmc/rank_normalization_test.cpp
+54 −0		src/test/unit/analyze/mcmc/rhat_basic_test.cpp
+46 −0		src/test/unit/analyze/mcmc/split_chains_test.cpp
+73 −0		src/test/unit/analyze/mcmc/split_rank_normalized_ess_test.cpp
+63 −0		src/test/unit/analyze/mcmc/split_rank_normalized_rhat_test.cpp
+1,057 −0		src/test/unit/analyze/mcmc/test_csv_files/bern1.csv
+1,057 −0		src/test/unit/analyze/mcmc/test_csv_files/bern2.csv
+1,057 −0		src/test/unit/analyze/mcmc/test_csv_files/bern3.csv
+1,057 −0		src/test/unit/analyze/mcmc/test_csv_files/bern4.csv
+18 −0		src/test/unit/analyze/mcmc/test_csv_files/cmdstan-2-35-0-stansummary.csv
+93 −15		src/test/unit/io/stan_csv_reader_test.cpp
+57 −0		src/test/unit/io/test_csv_files/bernoulli_no_samples.csv
+1,057 −0		src/test/unit/io/test_csv_files/bernoulli_thin.csv
+1,039 −0		src/test/unit/io/test_csv_files/bernoulli_variational.csv
+2,057 −0		src/test/unit/io/test_csv_files/bernoulli_warmup.csv
+55 −0		src/test/unit/io/test_csv_files/fixed_param_output.csv
+157 −0		src/test/unit/io/test_csv_files/no_parameters_hmc.csv
+1 −15		src/test/unit/mcmc/chains_test.cpp
+238 −0		src/test/unit/mcmc/chainset_test.cpp
+557 −0		src/test/unit/mcmc/test_csv_files/bernoulli_500.csv
+1,057 −0		src/test/unit/mcmc/test_csv_files/bernoulli_default.csv
+1,057 −0		src/test/unit/mcmc/test_csv_files/bernoulli_thin.csv
+2,057 −0		src/test/unit/mcmc/test_csv_files/bernoulli_warmup.csv
+82 −0		src/test/unit/mcmc/test_csv_files/datagen_output.csv
+557 −0		src/test/unit/mcmc/test_csv_files/eight_schools_1.csv
+557 −0		src/test/unit/mcmc/test_csv_files/eight_schools_2.csv
+17 −0		src/test/unit/services/instrumented_callbacks.hpp
+58 −0		src/test/unit/services/util/fail_init_test.cpp
+10 −11		src/test/unit/services/util/initialize_test.cpp
+2 −2		src/test/unit/version_test.cpp