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  1. CRC_atlas_Neutro Public

    Scripts required for the DE and velocity analysis of the MUI dataset

    Jupyter Notebook 3

  2. luca Public

    Forked from icbi-lab/luca

    Single-cell Lung Cancer Atlas with 1.2M cells

    Python 2

  3. CRC_atlas_velocyto Public

    A nextflow pipeline to run velocyto on 10X/BD samples (CRC atlas project)

    Nextflow 2 1

  4. NeoFuse Public

    Forked from icbi-lab/NeoFuse

    NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.

    Shell 1

  5. nextNEOpi Public

    Forked from icbi-lab/nextNEOpi

    nextNEOpi: a comprehensive pipeline for computational neoantigen prediction

    Nextflow 1

  6. icbi-lab/infercnvpy Public

    Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

    Python 145 27

218 contributions in the last year

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Activity overview

Contributed to abyssum/spatial, abyssum/TCGA_SKCM_scripts, abyssum/CRC_atlas_Neutro and 10 other repositories
Loading A graph representing abyssum's contributions from February 25, 2024 to February 25, 2025. The contributions are 97% commits, 2% pull requests, 1% issues, 0% code review.

Contribution activity

February 2025

Created 7 commits in 1 repository
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