ADD: trac from classo - individual w Classo (#16)

* classo exploration

* implement calculation of matrix A

* good enough version - hopefully working

* working trac version to be implemented in ritme

* wip to setup trac in ritme

* newest conda env setup

* add trac model

* update trac search space

* 2nd committee meeting setup + best hyperparams range

* starting to debug evaluation

* fix empty tax + phylo

* testing individual classo model

* add trac as individual model no CV

* updated env

* adding tests

* try to fix test

* try to fix test with updated GHAs

* consistent update of GHA

* correct node labelling in trac

* try to fix GHA

* fix node naming in df_a

* modularize trac model

* rename model_space

* fix import

* try to fix GHA error

* try to fix GHA error again

* adding unit tests

* remove codecov line comments in PR

.github/codecov.yml

@@ -0,0 +1 @@
+comment: off

ci/recipe/meta.yaml

@@ -22,9 +22,11 @@ requirements:
     - importlib-metadata
     - qiime2 {{ qiime2_epoch }}.*
     - q2-feature-table {{ qiime2_epoch }}.*
+    - q2-phylogeny {{ qiime2_epoch }}.*
     - lightning
     - mlflow
     - numpy
+    - packaging
     - pandas
     - pip
     - pytorch
@@ -44,6 +46,9 @@ requirements:
   run_constrained:
     - pip:
       - coral_pytorch
+      - c-lasso
+      # grpcio pinned due to incompatibility with ray caused by c-lasso
+      - grpcio==1.51.1
 
 
 test: