newest bash scripts for slurm ignoring json files

.gitignore

@@ -158,3 +158,7 @@ x_*
 # logs from slurm launches
 *_err.txt
 *_out.txt
+
+# all but one json config file
+*.json
+!run_config.json

ci/recipe/meta.yaml

@@ -29,9 +29,10 @@ requirements:
     - pip
     - pytorch
     - py-xgboost
-    # todo: update to newest ray-tune version
+    # todo: update to newest ray-tune version (then dashboard also works as it
+    # should)
+    - ray-default==2.6.3
     - ray-tune==2.6.3
-    - ray-default
     - scipy
     - scikit-learn
     - scikit-bio

launch_slurm_compare.sh

@@ -0,0 +1,12 @@
+#!/bin/bash
+
+#SBATCH --job-name="r_5c_cpu_t10_compare"
+#SBATCH -A es_bokulich
+#SBATCH --nodes=1
+#SBATCH --cpus-per-task=16
+#SBATCH --time=01:59:59
+#SBATCH --mem-per-cpu=1024
+#SBATCH --output="%x_out.txt"
+#SBATCH --open-mode=append
+
+python q2_ritme/eval_best_trial_overall.py --model_path "experiments/models"

launch_slurm_cpu.sh

@@ -1,10 +1,10 @@
 #!/bin/bash
 
-#SBATCH --job-name="r_5c_cpu_t10"
+#SBATCH --job-name="ra_5c_cpu_t10_long_rf"
 #SBATCH -A es_bokulich
 #SBATCH --nodes=1
-#SBATCH --cpus-per-task=20
-#SBATCH --time=1:00:00
+#SBATCH --cpus-per-task=30
+#SBATCH --time=03:59:59
 #SBATCH --mem-per-cpu=1024
 #SBATCH --output="%x_out.txt"
 #SBATCH --open-mode=append
@@ -16,7 +16,7 @@ set -x
 
 # ! USER SETTINGS HERE
 # -> config file to use
-CONFIG="q2_ritme/r_5c_cpu_t10.json"
+CONFIG="q2_ritme/ra_5c_cpu_t10_long_rf.json"
 # ! USER END __________
 
 # __doc_head_address_start__