Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

ADD: slurm support #11

Merged
merged 8 commits into from
Apr 23, 2024
Merged

ADD: slurm support #11

merged 8 commits into from
Apr 23, 2024

Conversation

adamovanja
Copy link
Owner

@adamovanja adamovanja commented Apr 17, 2024

this PR adds:

  • bash script for running ritme on HPC with slurm
  • fixes feature definition to be consistent (currently col_name starts with "F")
  • attempts to reduce RandomForest search space such that models are trained quicker

Copy link

codecov bot commented Apr 17, 2024

Codecov Report

Attention: Patch coverage is 14.28571% with 12 lines in your changes are missing coverage. Please review.

Project coverage is 57.72%. Comparing base (202c31f) to head (2dd2deb).

❗ Current head 2dd2deb differs from pull request most recent head d8d0fad. Consider uploading reports for the commit d8d0fad to get more accurate results

Files Patch % Lines
q2_ritme/tune_models.py 0.00% 11 Missing ⚠️
q2_ritme/run_n_eval_tune.py 0.00% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main      #11      +/-   ##
==========================================
- Coverage   58.30%   57.72%   -0.58%     
==========================================
  Files          17       17              
  Lines         897      906       +9     
  Branches       84       86       +2     
==========================================
  Hits          523      523              
- Misses        369      378       +9     
  Partials        5        5              

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@adamovanja adamovanja merged commit 4d0c200 into main Apr 23, 2024
2 checks passed
@adamovanja adamovanja deleted the add_slurm_support branch April 23, 2024 13:17
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant