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Refactor constructor#143

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radka-j wants to merge 33 commits intomainagate-model/Agate.jl:mainfrom constructor_refactoragate-model/Agate.jl:constructor_refactorCopy head branch name to clipboard

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Commits on Jan 30, 2025

• update docstring examples

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Commits on Jan 31, 2025

• single value params don't need to be arrays

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• clean up function

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• bgc_args -> constant_args

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• add default GEIDER args

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• update example

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• add arg to make it explicit what plankton types summing over"

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• add linear mortality per plankton type

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Commits on Feb 3, 2025

• minor refactor

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• refactor

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Commits on Feb 4, 2025

• Merge pull request #144 from agate-model/refactor_tracers

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• mv out params dict construction to separate function

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• add placeholder function

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Commits on Feb 7, 2025

• revert back to phyto/zoo args and handle group level parameters

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• add default geider args

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• update docstrings

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• add docstrings

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• try to separate out construct/instantiate methods more cleanly

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Commits on Feb 11, 2025

• add n_phyto/zoo fields to struct, revert to contructor having default values

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• revert change in what parameters types allow

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• update tests

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• formatting

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• fix example

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• convert params to dictionary before instantiating model

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• minor refactor

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• update test

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• update tests

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  aab9965

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• simplify test

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  dbf4e18

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• update example

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• formatting

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• add comment

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Commits on Feb 14, 2025

• add tests for creating objects inside loops/functions

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• clean up

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