changed output directory to airoldifs2

airoldilab · Sep 10, 2012 · cf61bea · cf61bea
1 parent d39578f
commit cf61bea
Show file tree

Hide file tree

Showing 100 changed files with 117 additions and 117 deletions.
diff --git a/extract_reuters_data/extract_article.lsf b/extract_reuters_data/extract_article.lsf
@@ -8,7 +8,7 @@
 porter_stem=False
 
 data_dir=/n/scratch06/airoldi_scratch/jbischof/reuters_data/
-out_dir=/n/airoldifs1/jbischof/reuters_output/
+out_dir=/n/airoldifs2/lab/jbischof/reuters_output/
 outfilename=${out_dir}reuters_art_extract.txt
 
 python extract_functions/extract_article.py $data_dir $outfilename $porter_stem

diff --git a/extract_reuters_data/extract_functions/extract_article.py b/extract_reuters_data/extract_functions/extract_article.py
@@ -81,7 +81,7 @@ def article_extract(dataDir,outFilename,porter_stem=False):
 
 # Set parameters
 #data_dir = "/n/scratch06/airoldi_scratch/jbischof/reuters_data"
-#dir_out = "/n/airoldifs1/jbischof/reuters_output/"
+#dir_out = "/n/airoldifs2/lab/jbischof/reuters_output/"
 # Change the directories for this trial run
 #data_dir = "19960820_subset/"
 #dir_out = "subset_output/"

diff --git a/extract_reuters_data/extract_functions/gen_term_doc_topic_dict.py b/extract_reuters_data/extract_functions/gen_term_doc_topic_dict.py
@@ -72,6 +72,6 @@ def gen_term_doc_topic_dict(infile_name,outfile_name):
    outfile.close()
 
 
-infile_name = "/n/airoldifs1/jbischof/reuters_output/reuters_topic_codes.txt"
-outfile_name = "/n/airoldifs1/jbischof/reuters_output/reuters_term_topic_codes.txt"
+infile_name = "/n/airoldifs2/lab/jbischof/reuters_output/reuters_topic_codes.txt"
+outfile_name = "/n/airoldifs2/lab/jbischof/reuters_output/reuters_term_topic_codes.txt"
 gen_term_doc_topic_dict(infile_name,outfile_name)
diff --git a/extract_reuters_data/get_topic_codes.lsf b/extract_reuters_data/get_topic_codes.lsf
@@ -5,7 +5,7 @@
 #BSUB -J "get_topic_codes"
 
 data_dir=/n/scratch06/airoldi_scratch/jbischof/reuters_data/
-out_dir=/n/airoldifs1/jbischof/reuters_output/
+out_dir=/n/airoldifs2/lab/jbischof/reuters_output/
 outfilename=${out_dir}reuters_topic_codes.txt
 
 

diff --git a/extract_reuters_data/process_get_lda_data.py b/extract_reuters_data/process_get_lda_data.py
@@ -17,8 +17,8 @@
 # Creates dictionary and also creates output file for analysis
 
 # Filenames
-dir_out = "/n/airoldifs1/jbischof/reuters_output/"
-#dir_out = "/n/airoldifs1/jbischof/reuters_output/mmm_raw_data/"
+dir_out = "/n/airoldifs2/lab/jbischof/reuters_output/"
+#dir_out = "/n/airoldifs2/lab/jbischof/reuters_output/mmm_raw_data/"
 infile_sax = dir_out + "reuters_stemmed_art_extract.txt"
 infile_tdt = dir_out + "reuters_term_topic_codes.txt"
 outfile_lda = dir_out + "reuters_ldaformat.txt"

diff --git a/mmm_analysis_code/get_kept_stop_words.py b/mmm_analysis_code/get_kept_stop_words.py
@@ -9,7 +9,7 @@
 raw_data_dir = main_dir + "mmm_raw_data/"
 analysis_dir = main_dir + "mmm_analysis_out/"
 infilename_kept_words = raw_data_dir + "reuters_mmm_kept_word_ids" + str(cutoff) +".txt"
-infilename_stemmed_wc = "/n/airoldifs1/jbischof/reuters_output/reuters_stemmed_wc.txt"
+infilename_stemmed_wc = "/n/airoldifs2/lab/jbischof/reuters_output/reuters_stemmed_wc.txt"
 outfilename = analysis_dir + "kept_stop_words" + str(cutoff) +".txt"
 infilename_stop_words = "stop_word_lists/SMART_nltk_merge_stem_stop.txt"
 

diff --git a/mmm_analysis_code/get_stop_reg_comp.R b/mmm_analysis_code/get_stop_reg_comp.R
@@ -13,7 +13,7 @@ weight.phi <- 0.5
 stop.reg.dir <- paste(analysis.dir,"stop_reg_plots/",sep="")
 
 ## cutoff <- 500
-## main.dir <- "/n/airoldifs1/jbischof/reuters_output/"
+## main.dir <- "/n/airoldifs2/lab/jbischof/reuters_output/"
 ## fit.dir <- paste(main.dir,"mmm_fits/fit_train",cutoff,"/",sep="")
 ## analysis.dir <- paste(main.dir,"mmm_analysis_out/",sep="")
 

diff --git a/mmm_analysis_code/get_total_word_count.py b/mmm_analysis_code/get_total_word_count.py
@@ -7,7 +7,7 @@
 cutoff = sys.argv[2]
 
 #cutoff = 250
-#main_dir = "/n/airoldifs1/jbischof/reuters_output/"
+#main_dir = "/n/airoldifs2/lab/jbischof/reuters_output/"
 raw_data_dir = main_dir + "mmm_raw_data/"
 analysis_dir = main_dir + "mmm_analysis_out/"
 infilename_kept_words = raw_data_dir + "reuters_mmm_kept_word_ids" + str(cutoff) +".txt"

diff --git a/mmm_analysis_code/process_word_analysis.lsf b/mmm_analysis_code/process_word_analysis.lsf
@@ -10,6 +10,6 @@
 #BSUB -J "process_word_analysis"
 
 # THE COMMAND TO GIVE TO R, CHANGE TO THE APPROPRIATE FILENAME:
-# main_dir=/n/airoldifs1/jbischof/reuters_output/
+# main_dir=/n/airoldifs2/lab/jbischof/reuters_output/
 # cutoff=500
 ./process_word_analysis.sh
diff --git a/mmm_analysis_code/process_word_analysis.sh b/mmm_analysis_code/process_word_analysis.sh
@@ -1,5 +1,5 @@
 # Master script to analyze output of model to understand word usage patterns
-main_dir=/n/airoldifs1/jbischof/reuters_output/
+main_dir=/n/airoldifs2/lab/jbischof/reuters_output/
 cutoff=500
 fit_dir=${main_dir}mmm_fits/fit_train${cutoff}/
 analysis_dir=${main_dir}mmm_analysis_out/

diff --git a/mmm_analysis_code/reuters_mix_mem.py b/mmm_analysis_code/reuters_mix_mem.py
@@ -247,7 +247,7 @@ def topic_mem_dicts_out(outfile_name,topic_mem_dict,topic_any_dict,topic_cl_dict
    outfile.close()
 
 topic_code_file = "/n/home13/jbischof/reuters_prj/mmm_analysis_code/topic_codes.txt"
-main_dir = "/n/airoldifs1/jbischof/reuters_output/"
+main_dir = "/n/airoldifs2/lab/jbischof/reuters_output/"
 out_dir = main_dir + "mmm_analysis_out/"
 infile_name = main_dir + "reuters_term_topic_codes.txt"
 outfile_mixm = out_dir + "mix_mem_tab.txt"

diff --git a/mmm_class_code/fold_runs/get_partition_doc_ids_fold.lsf b/mmm_class_code/fold_runs/get_partition_doc_ids_fold.lsf
@@ -9,7 +9,7 @@
 # THE JOB ARRAY:
 #BSUB -J "get_partition_doc_ids[1-10]"
 
-main_dir=/n/airoldifs1/jbischof/reuters_output/mmm_folds/fold${LSB_JOBINDEX}/
+main_dir=/n/airoldifs2/lab/jbischof/reuters_output/mmm_folds/fold${LSB_JOBINDEX}/
 
 # THE COMMAND TO GIVE TO R, CHANGE TO THE APPROPRIATE FILENAME:
 python ../mmm_class_functions/get_partition_doc_ids.py $main_dir
diff --git a/mmm_class_code/fold_runs/get_reuters_doc_topic_membs_fold.lsf b/mmm_class_code/fold_runs/get_reuters_doc_topic_membs_fold.lsf
@@ -9,7 +9,7 @@
 # THE JOB ARRAY:
 #BSUB -J "get_reuters_doc_topic_membs[1-10]"
 
-main_dir=/n/airoldifs1/jbischof/reuters_output/mmm_folds/fold${LSB_JOBINDEX}/
+main_dir=/n/airoldifs2/lab/jbischof/reuters_output/mmm_folds/fold${LSB_JOBINDEX}/
 
 # THE COMMAND TO GIVE TO R, CHANGE TO THE APPROPRIATE FILENAME:
 python ../mmm_class_functions/process_get_reuters_doc_topic_membs.py $main_dir
diff --git a/mmm_class_code/fold_runs/get_reuters_pred_labels_fold.lsf b/mmm_class_code/fold_runs/get_reuters_pred_labels_fold.lsf
@@ -26,7 +26,7 @@ max_only=1
 cutoff=500
 nodes=10
 partition=test
-main_dir=/n/airoldifs1/jbischof/reuters_output/mmm_folds/fold${fold}/
+main_dir=/n/airoldifs2/lab/jbischof/reuters_output/mmm_folds/fold${fold}/
 slave_data_dir=${main_dir}mmm_class_out/${partition}_slave_data${cutoff}/
 out_dir=${main_dir}mmm_class_out/${partition}_class_${cutoff}/
 slave_id=${LSB_JOBINDEX}

diff --git a/mmm_class_code/fold_runs/get_reuters_pred_labels_setup_fold.lsf b/mmm_class_code/fold_runs/get_reuters_pred_labels_setup_fold.lsf
@@ -12,7 +12,7 @@
 cutoff=500
 nodes=10
 partition=test
-main_dir=/n/airoldifs1/jbischof/reuters_output/mmm_folds/fold${LSB_JOBINDEX}/
+main_dir=/n/airoldifs2/lab/jbischof/reuters_output/mmm_folds/fold${LSB_JOBINDEX}/
 out_dir=${main_dir}mmm_class_out/${partition}_slave_data${cutoff}/
 fit_dir=${main_dir}mmm_fits/fit_train${cutoff}/
 data_dir=${main_dir}mmm_raw_data/

diff --git a/mmm_class_code/fold_runs/get_unfinished_class_docs_fold.lsf b/mmm_class_code/fold_runs/get_unfinished_class_docs_fold.lsf
@@ -16,7 +16,7 @@ cat_tag=final_class
 
 partition=test
 cutoff=500
-main_dir=/n/airoldifs1/jbischof/reuters_output/mmm_folds/fold${LSB_JOBINDEX}/
+main_dir=/n/airoldifs2/lab/jbischof/reuters_output/mmm_folds/fold${LSB_JOBINDEX}/
 raw_data_dir=${main_dir}mmm_raw_data/
 class_dir=${main_dir}mmm_class_out/
 output_dir=${class_dir}${partition}_class_${cutoff}/

diff --git a/mmm_class_code/fold_runs/process_model_comp_mmm_fold.lsf b/mmm_class_code/fold_runs/process_model_comp_mmm_fold.lsf
@@ -12,7 +12,7 @@
 #BSUB -R rusage[mem=5000]
 
 # THE COMMAND TO GIVE TO R, CHANGE TO THE APPROPRIATE FILENAME:
-main_dir=/n/airoldifs1/jbischof/reuters_output/mmm_folds/fold${LSB_JOBINDEX}/
+main_dir=/n/airoldifs2/lab/jbischof/reuters_output/mmm_folds/fold${LSB_JOBINDEX}/
 cutoff=500
 out_dir=${main_dir}mmm_class_out/topic_class_out/
 

diff --git a/mmm_class_code/get_fold_ave_perf.sh b/mmm_class_code/get_fold_ave_perf.sh
@@ -1,6 +1,6 @@
 # Script to calculate average fold 
 
-#main_dir=/n/airoldifs1/jbischof/reuters_output/
+#main_dir=/n/airoldifs2/lab/jbischof/reuters_output/
 funct_dir="/n/home13/jbischof/reuters_prj/mmm_class_code/mmm_class_functions/"
 
 #Get arguments to script

diff --git a/mmm_class_code/get_partition_doc_ids.lsf b/mmm_class_code/get_partition_doc_ids.lsf
@@ -9,7 +9,7 @@
 # THE JOB ARRAY:
 #BSUB -J "get_partition_doc_ids"
 
-main_dir=/n/airoldifs1/jbischof/reuters_output/
+main_dir=/n/airoldifs2/lab/jbischof/reuters_output/
 
 # THE COMMAND TO GIVE TO R, CHANGE TO THE APPROPRIATE FILENAME:
 python mmm_class_functions/get_partition_doc_ids.py $main_dir
diff --git a/mmm_class_code/get_reuters_doc_topic_membs.lsf b/mmm_class_code/get_reuters_doc_topic_membs.lsf
@@ -9,7 +9,7 @@
 # THE JOB ARRAY:
 #BSUB -J "get_reuters_doc_topic_membs"
 
-main_dir=/n/airoldifs1/jbischof/reuters_output/
+main_dir=/n/airoldifs2/lab/jbischof/reuters_output/
 
 # THE COMMAND TO GIVE TO R, CHANGE TO THE APPROPRIATE FILENAME:
 python mmm_class_functions/process_get_reuters_doc_topic_membs.py $main_dir
diff --git a/mmm_class_code/get_reuters_pred_labels.R b/mmm_class_code/get_reuters_pred_labels.R
@@ -12,7 +12,7 @@ max.only <- as.numeric(args[5])
 
 ## cutoff <- 500
 ## partition <- "valid"
-## main.dir <- "/n/airoldifs1/jbischof/reuters_output/"
+## main.dir <- "/n/airoldifs2/lab/jbischof/reuters_output/"
 ## slave.data.dir <- paste(main.dir,"mmm_class_out/",partition,
 ##                  "_slave_data",cutoff,"/",sep="")
 ## slave.id <- 1

diff --git a/mmm_class_code/get_reuters_pred_labels.lsf b/mmm_class_code/get_reuters_pred_labels.lsf
@@ -25,7 +25,7 @@ max_only=1
 cutoff=500
 nodes=200
 partition=test
-main_dir=/n/airoldifs1/jbischof/reuters_output/
+main_dir=/n/airoldifs2/lab/jbischof/reuters_output/
 slave_data_dir=${main_dir}mmm_class_out/${partition}_slave_data${cutoff}/
 out_dir=${main_dir}mmm_class_out/${partition}_class_${cutoff}/
 slave_id=${LSB_JOBINDEX}

diff --git a/mmm_class_code/get_reuters_pred_labels_setup.lsf b/mmm_class_code/get_reuters_pred_labels_setup.lsf
@@ -12,7 +12,7 @@
 cutoff=500
 nodes=200
 partition=test
-main_dir=/n/airoldifs1/jbischof/reuters_output/
+main_dir=/n/airoldifs2/lab/jbischof/reuters_output/
 out_dir=${main_dir}mmm_class_out/${partition}_slave_data${cutoff}/
 fit_dir=${main_dir}mmm_fits/fit_train${cutoff}/
 data_dir=${main_dir}mmm_raw_data/

diff --git a/mmm_class_code/get_unfinished_class_docs.lsf b/mmm_class_code/get_unfinished_class_docs.lsf
@@ -15,7 +15,7 @@ iter=1
 
 partition=test
 cutoff=500
-main_dir=/n/airoldifs1/jbischof/reuters_output/
+main_dir=/n/airoldifs2/lab/jbischof/reuters_output/
 raw_data_dir=${main_dir}mmm_raw_data/
 class_dir=${main_dir}mmm_class_out/
 output_dir=${class_dir}${partition}_class_${cutoff}/

diff --git a/mmm_class_code/lab_lda_code/mv_lab_lda_out_dir.sh b/mmm_class_code/lab_lda_code/mv_lab_lda_out_dir.sh
@@ -2,7 +2,7 @@
 
 cutoff=500
 evan_dir=/n/airoldifs1/egreif/jon/jar-extract/scripts/output/
-main_dir=/n/airoldifs1/jbischof/reuters_output/
+main_dir=/n/airoldifs2/lab/jbischof/reuters_output/
 raw_data_dir=${main_dir}mmm_raw_data/
 fit_data_dir=${main_dir}mmm_fits/
 class_dir=${main_dir}mmm_class_out/

diff --git a/mmm_class_code/lab_lda_code/process_model_comp_lab_lda.sh b/mmm_class_code/lab_lda_code/process_model_comp_lab_lda.sh
@@ -1,7 +1,7 @@
 # Script to coordinate model classification comparison after model-specific
 # class probabilities have been generated
 
-#main_dir=/n/airoldifs1/jbischof/reuters_output/
+#main_dir=/n/airoldifs2/lab/jbischof/reuters_output/
 funct_dir="/n/home13/jbischof/reuters_prj/mmm_class_code/mmm_class_functions/"
 
 #Get arguments to script

diff --git a/mmm_class_code/lab_lda_code/process_model_comp_lab_lda_fold.lsf b/mmm_class_code/lab_lda_code/process_model_comp_lab_lda_fold.lsf
@@ -12,7 +12,7 @@
 #BSUB -R rusage[mem=5000]
 
 # THE COMMAND TO GIVE TO R, CHANGE TO THE APPROPRIATE FILENAME:
-main_dir=/n/airoldifs1/jbischof/reuters_output/mmm_folds/fold${LSB_JOBINDEX}/
+main_dir=/n/airoldifs2/lab/jbischof/reuters_output/mmm_folds/fold${LSB_JOBINDEX}/
 cutoff=500
 out_dir=${main_dir}mmm_class_out/topic_class_out/
 

diff --git a/mmm_class_code/liblinear_fit_code/get_ldac_data.lsf b/mmm_class_code/liblinear_fit_code/get_ldac_data.lsf
@@ -11,7 +11,7 @@
 
 
 # THE COMMAND TO GIVE TO R, CHANGE TO THE APPROPRIATE FILENAME:
-main_dir=/n/airoldifs1/jbischof/reuters_output/
+main_dir=/n/airoldifs2/lab/jbischof/reuters_output/
 cutoff=500
 raw_data_dir=${main_dir}mmm_raw_data/
 out_dir=${raw_data_dir}ldac_data/

diff --git a/mmm_class_code/liblinear_fit_code/get_ldac_data_fold.lsf b/mmm_class_code/liblinear_fit_code/get_ldac_data_fold.lsf
@@ -11,7 +11,7 @@
 
 
 # THE COMMAND TO GIVE TO R, CHANGE TO THE APPROPRIATE FILENAME:
-main_dir=/n/airoldifs1/jbischof/reuters_output/mmm_folds/fold${LSB_JOBINDEX}/
+main_dir=/n/airoldifs2/lab/jbischof/reuters_output/mmm_folds/fold${LSB_JOBINDEX}/
 cutoff=500
 raw_data_dir=${main_dir}mmm_raw_data/
 out_dir=${raw_data_dir}ldac_data/

diff --git a/mmm_class_code/liblinear_fit_code/get_liblinear_data.lsf b/mmm_class_code/liblinear_fit_code/get_liblinear_data.lsf
@@ -11,7 +11,7 @@
 
 
 # THE COMMAND TO GIVE TO R, CHANGE TO THE APPROPRIATE FILENAME:
-main_dir=/n/airoldifs1/jbischof/reuters_output/
+main_dir=/n/airoldifs2/lab/jbischof/reuters_output/
 raw_data_dir=${main_dir}mmm_raw_data/
 out_dir=${raw_data_dir}liblinear_data/
 

diff --git a/mmm_class_code/liblinear_fit_code/get_liblinear_data_fold.lsf b/mmm_class_code/liblinear_fit_code/get_liblinear_data_fold.lsf
@@ -14,5 +14,5 @@
 #BSUB -mig 30
 
 # THE COMMAND TO GIVE TO R, CHANGE TO THE APPROPRIATE FILENAME:
-main_dir=/n/airoldifs1/jbischof/reuters_output/mmm_folds/fold${LSB_JOBINDEX}/
+main_dir=/n/airoldifs2/lab/jbischof/reuters_output/mmm_folds/fold${LSB_JOBINDEX}/
 python ../mmm_class_functions/get_liblinear_data.py $main_dir
diff --git a/mmm_class_code/liblinear_fit_code/get_logit_liblinear_train.lsf b/mmm_class_code/liblinear_fit_code/get_logit_liblinear_train.lsf
@@ -11,7 +11,7 @@
 
 # THE COMMAND TO GIVE TO R, CHANGE TO THE APPROPRIATE FILENAME:
 model=logit
-main_dir=/n/airoldifs1/jbischof/reuters_output/
+main_dir=/n/airoldifs2/lab/jbischof/reuters_output/
 class_dir=${main_dir}mmm_class_out/
 cutoff=500
 out_dir=${class_dir}${model}_liblinear_fits${cutoff}/

diff --git a/mmm_class_code/liblinear_fit_code/get_logit_liblinear_train_fold.lsf b/mmm_class_code/liblinear_fit_code/get_logit_liblinear_train_fold.lsf
@@ -11,7 +11,7 @@
 
 # THE COMMAND TO GIVE TO R, CHANGE TO THE APPROPRIATE FILENAME:
 model=logit
-main_dir=/n/airoldifs1/jbischof/reuters_output/mmm_folds/fold${LSB_JOBINDEX}/
+main_dir=/n/airoldifs2/lab/jbischof/reuters_output/mmm_folds/fold${LSB_JOBINDEX}/
 class_dir=${main_dir}mmm_class_out/
 cutoff=500
 out_dir=${class_dir}${model}_liblinear_fits${cutoff}/

diff --git a/mmm_class_code/liblinear_fit_code/get_svm_liblinear_train.lsf b/mmm_class_code/liblinear_fit_code/get_svm_liblinear_train.lsf
@@ -11,7 +11,7 @@
 
 # THE COMMAND TO GIVE TO R, CHANGE TO THE APPROPRIATE FILENAME:
 model=svm
-main_dir=/n/airoldifs1/jbischof/reuters_output/
+main_dir=/n/airoldifs2/lab/jbischof/reuters_output/
 class_dir=${main_dir}mmm_class_out/
 cutoff=500
 out_dir=${class_dir}${model}_liblinear_fits${cutoff}/

diff --git a/mmm_class_code/liblinear_fit_code/get_svm_liblinear_train_fold.lsf b/mmm_class_code/liblinear_fit_code/get_svm_liblinear_train_fold.lsf
@@ -11,7 +11,7 @@
 
 # THE COMMAND TO GIVE TO R, CHANGE TO THE APPROPRIATE FILENAME:
 model=svm
-main_dir=/n/airoldifs1/jbischof/reuters_output/mmm_folds/fold${LSB_JOBINDEX}/
+main_dir=/n/airoldifs2/lab/jbischof/reuters_output/mmm_folds/fold${LSB_JOBINDEX}/
 class_dir=${main_dir}mmm_class_out/
 cutoff=500
 out_dir=${class_dir}${model}_liblinear_fits${cutoff}/

diff --git a/mmm_class_code/liblinear_fit_code/process_model_comp_liblinear.sh b/mmm_class_code/liblinear_fit_code/process_model_comp_liblinear.sh
@@ -1,7 +1,7 @@
 # Script to coordinate model classification comparison after model-specific
 # class probabilities have been generated
 
-#main_dir=/n/airoldifs1/jbischof/reuters_output/
+#main_dir=/n/airoldifs2/lab/jbischof/reuters_output/
 funct_dir="/n/home13/jbischof/reuters_prj/mmm_class_code/mmm_class_functions/"
 
 #Get arguments to script

diff --git a/mmm_class_code/liblinear_fit_code/process_model_comp_logit_liblinear.lsf b/mmm_class_code/liblinear_fit_code/process_model_comp_logit_liblinear.lsf
@@ -10,7 +10,7 @@
 #BSUB -J "process_model_comp_liblinear_logit"
 
 # THE COMMAND TO GIVE TO R, CHANGE TO THE APPROPRIATE FILENAME:
-main_dir=/n/airoldifs1/jbischof/reuters_output/
+main_dir=/n/airoldifs2/lab/jbischof/reuters_output/
 cutoff=500
 out_dir=${main_dir}mmm_class_out/topic_class_out/
 

diff --git a/mmm_class_code/liblinear_fit_code/process_model_comp_logit_liblinear_fold.lsf b/mmm_class_code/liblinear_fit_code/process_model_comp_logit_liblinear_fold.lsf
@@ -10,7 +10,7 @@
 #BSUB -J "process_model_comp_liblinear_logit[1-10]"
 
 # THE COMMAND TO GIVE TO R, CHANGE TO THE APPROPRIATE FILENAME:
-main_dir=/n/airoldifs1/jbischof/reuters_output/mmm_folds/fold${LSB_JOBINDEX}/
+main_dir=/n/airoldifs2/lab/jbischof/reuters_output/mmm_folds/fold${LSB_JOBINDEX}/
 cutoff=500
 out_dir=${main_dir}mmm_class_out/topic_class_out/
 

diff --git a/mmm_class_code/liblinear_fit_code/process_model_comp_svm_liblinear.lsf b/mmm_class_code/liblinear_fit_code/process_model_comp_svm_liblinear.lsf
@@ -10,7 +10,7 @@
 #BSUB -J "process_model_comp_liblinear_svm"
 
 # THE COMMAND TO GIVE TO R, CHANGE TO THE APPROPRIATE FILENAME:
-main_dir=/n/airoldifs1/jbischof/reuters_output/
+main_dir=/n/airoldifs2/lab/jbischof/reuters_output/
 cutoff=500
 out_dir=${main_dir}mmm_class_out/topic_class_out/
 

diff --git a/mmm_class_code/liblinear_fit_code/process_model_comp_svm_liblinear_fold.lsf b/mmm_class_code/liblinear_fit_code/process_model_comp_svm_liblinear_fold.lsf
@@ -10,7 +10,7 @@
 #BSUB -J "process_model_comp_liblinear_svm[1-10]"
 
 # THE COMMAND TO GIVE TO R, CHANGE TO THE APPROPRIATE FILENAME:
-main_dir=/n/airoldifs1/jbischof/reuters_output/mmm_folds/fold${LSB_JOBINDEX}/
+main_dir=/n/airoldifs2/lab/jbischof/reuters_output/mmm_folds/fold${LSB_JOBINDEX}/
 cutoff=500
 out_dir=${main_dir}mmm_class_out/topic_class_out/
 

diff --git a/mmm_class_code/liblinear_fit_code/setup_fold_dirs.sh b/mmm_class_code/liblinear_fit_code/setup_fold_dirs.sh
@@ -1,7 +1,7 @@
 #!/bin/bash
 
 cutoff=500
-main_dir=/n/airoldifs1/jbischof/reuters_output/
+main_dir=/n/airoldifs2/lab/jbischof/reuters_output/
 raw_data_dir=${main_dir}mmm_raw_data/
 fit_data_dir=${main_dir}mmm_fits/
 class_dir=${main_dir}mmm_class_out/

diff --git a/mmm_class_code/mmm_class_functions/get_ave_fold_perf.R b/mmm_class_code/mmm_class_functions/get_ave_fold_perf.R
@@ -13,7 +13,7 @@ if(model=="mmm"){
 }
 
 for( fold in folds ) {
-  main.dir <- paste("/n/airoldifs1/jbischof/reuters_output/mmm_folds/fold",
+  main.dir <- paste("/n/airoldifs2/lab/jbischof/reuters_output/mmm_folds/fold",
                     fold,"/",sep="")
   topic.class.dir <- paste(main.dir,"mmm_class_out/topic_class_out/",sep="")
   fold.perf.file <- paste(topic.class.dir,"reuters_",model,
@@ -36,7 +36,7 @@ fold.perf.ave <- round(apply(perf.array,1:2,mean),4)
 fold.perf.sd <- round(apply(perf.array,1:2,sd),4)
 
 # Write output to disk
-out.dir <- "/n/airoldifs1/jbischof/reuters_output/mmm_folds/"
+out.dir <- "/n/airoldifs2/lab/jbischof/reuters_output/mmm_folds/"
 out.ave.file <- paste(out.dir,model,"_fold_perf_ave.txt",sep="")
 write.table(fold.perf.ave,file=out.ave.file,quote=FALSE,sep="\t")
 out.sd.file <- paste(out.dir,model,"_fold_perf_sd.txt",sep="")

diff --git a/mmm_class_code/mmm_class_functions/get_liblinear_data.py b/mmm_class_code/mmm_class_functions/get_liblinear_data.py
@@ -9,7 +9,7 @@
 #pos = int(sys.argv[2]) - 1
 
 # Directories
-#main_dir = "/n/airoldifs1/jbischof/reuters_output/"
+#main_dir = "/n/airoldifs2/lab/jbischof/reuters_output/"
 raw_data_dir = main_dir + "mmm_raw_data/"
 class_dir = main_dir + "mmm_class_out/"
 ldac_dir = raw_data_dir + "ldac_data/"