Fix R package validate example.

airr-community · May 2, 2018 · 29d689c · 29d689c
1 parent 6b6b49d
commit 29d689c
Show file tree

Hide file tree

Showing 2 changed files with 3 additions and 8 deletions.
diff --git a/docs/packages/airr-R/topics/validate_airr.rst b/docs/packages/airr-R/topics/validate_airr.rst
@@ -42,14 +42,9 @@ Examples
     df <- read_rearrangement(file)
 
     # Validate a data.frame against the Rearrangement schema
-    validate_airr(data, schema=RearrangementSchema)
-
-*Warning*:Warning: File is missing AIRR mandatory field(s): sequence_id,
-sequence, rev_comp, productive, v_call, d_call, j_call,
-sequence_alignment, germline_alignment, junction, junction_aa, v_cigar,
-d_cigar, j_cigar
+    validate_airr(df, schema=RearrangementSchema)
 
 ::
 
-    [1] FALSE
+    [1] TRUE
 
diff --git a/lang/R/R/Interface.R b/lang/R/R/Interface.R
@@ -76,7 +76,7 @@ read_airr <- function(file, base=c("0", "1"), schema=RearrangementSchema, ...) {
 #' df <- read_rearrangement(file)
 #' 
 #' # Validate a data.frame against the Rearrangement schema
-#' validate_airr(data, schema=RearrangementSchema)
+#' validate_airr(df, schema=RearrangementSchema)
 #' 
 #' @export
 validate_airr <- function(data, schema=RearrangementSchema){