Improvements and fixed setuptools install

install.sh

@@ -24,8 +24,9 @@ EndOfMessage
 # Remove any prior installation
 rm -r ./bin 2>/dev/null
 
-cd ./core
-CORE=$(pwd -P)
+# Get the install context
+INSTALL=$(pwd -P)
+cd ./core && CORE=$(pwd -P)
 
 echo -e "Installing GATB\n-----------------"
 cd kover/dataset/tools/kmer_tools
@@ -34,23 +35,17 @@ cd ${CORE}
 echo -e "\n\n"
 
 echo -e "Installing setuptools\n-----------------"
-python bootstrap_setuptools.py; rm setuptools-*.zip
+pip install setuptools
 echo -e "\n\n"
 
 echo -e "Installing Kover\n-----------------"
-python setup.py install
+pip install -e .
 echo -e "\n\n"
 
-echo -e "Cleaning up..."
-rm -r build; rm -r dist; rm -r kover.egg-info
-cd kover/dataset/tools/kmer_tools
-rm -r build
-cd ${CORE}
-
 # Create executable
 cd ..
 mkdir bin
 cd ./bin
 (echo -e "Creating Kover executable"; ln -s ../interfaces/command_line.py kover; chmod u+x ./kover)
-
 echo -e Done.
+echo -e "\n\nPlease add $INSTALL/bin/ to your PATH environment variable."