DOC: add citation (qiime2#21)

angrybee · Apr 20, 2018 · 6ca2dfb · 6ca2dfb
1 parent 08f757d
commit 6ca2dfb
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Showing 3 changed files with 13 additions and 3 deletions.
diff --git a/q2_cutadapt/citations.bib b/q2_cutadapt/citations.bib
@@ -0,0 +1,10 @@
+@article{martin2011cutadapt,
+  title={Cutadapt removes adapter sequences from high-throughput sequencing reads},
+  author={Martin, Marcel},
+  journal={EMBnet. journal},
+  volume={17},
+  number={1},
+  pages={pp--10},
+  year={2011},
+  doi={10.14806/ej.17.1.200}
+}
diff --git a/q2_cutadapt/plugin_setup.py b/q2_cutadapt/plugin_setup.py
@@ -8,6 +8,7 @@
 
 from qiime2.plugin import (
     Plugin,
+    Citations,
     MetadataColumn,
     Categorical,
     Float,
@@ -41,9 +42,7 @@
                 'adapters (e.g. barcodes, primers) in sequence data.',
     short_description='Plugin for removing adapter sequences, primers, and '
                       'other unwanted sequence from sequence data.',
-    citation_text='Martin, M. (2011). Cutadapt removes adapter sequences from '
-                  'high-throughput sequencing reads. EMBnet.Journal, 17(1), '
-                  'pp. 10-12.\ndoi:http://dx.doi.org/10.14806/ej.17.1.200',
+    citations=Citations.load('citations.bib', package='q2_cutadapt')
 )
 
 plugin.methods.register_function(

diff --git a/setup.py b/setup.py
@@ -25,6 +25,7 @@
         ['q2-cutadapt=q2_cutadapt.plugin_setup:plugin']
     },
     package_data={
+        'q2_cutadapt': ['citations.bib'],
         'q2_cutadapt.tests': [
             'data/*',
             'data/single-end/*',