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1. AllenInstitute/deep-neurographs AllenInstitute/deep-neurographs Public

   A Python package that utilizes machine learning to correct split mistakes in a fragmented neuron segmentation.

   Jupyter Notebook 3

2. AllenNeuralDynamics/segmentation-skeleton-metrics AllenNeuralDynamics/segmentation-skeleton-metrics Public

   A Python package for evaluating a predicted segmentation of neural arbors by computing skeleton-based metrics.

   Python 6

3. AllenNeuralDynamics/aind-exaspim-soma-detection AllenNeuralDynamics/aind-exaspim-soma-detection Public

   A Python package for detecting somas in ExaSPIM image datasets. Includes tools for image preprocessing and deep learning-based classification and training.

   Jupyter Notebook 1

4. AllenNeuralDynamics/supervoxel-loss AllenNeuralDynamics/supervoxel-loss Public

   Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

   Python 1