: Manually run by bertcarnell #46
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| # R-hub's generic GitHub Actions workflow file. It's canonical location is at | |
| # https://github.com/r-hub/actions/blob/v1/workflows/rhub.yaml | |
| # You can update this file to a newer version using the rhub2 package: | |
| # | |
| # rhub::rhub_setup() | |
| # | |
| # It is unlikely that you need to modify this file manually. | |
| name: R-hub | |
| run-name: "${{ github.event.inputs.id }}: ${{ github.event.inputs.name || format('Manually run by {0}', github.triggering_actor) }}" | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| config: | |
| description: 'A comma separated list of R-hub platforms to use.' | |
| type: string | |
| default: 'linux,windows,macos,macos-arm64,atlas,clang-asan,clang16,clang17,clang18,donttest,gcc13,intel,mkl,nold,nosuggests,ubuntu-clang,ubuntu-gcc12,ubuntu-next,ubuntu-release,valgrind' | |
| name: | |
| description: 'Run name. You can leave this empty now.' | |
| type: string | |
| id: | |
| description: 'Unique ID. You can leave this empty now.' | |
| type: string | |
| jobs: | |
| setup: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| containers: ${{ steps.rhub-setup.outputs.containers }} | |
| platforms: ${{ steps.rhub-setup.outputs.platforms }} | |
| steps: | |
| # NO NEED TO CHECKOUT HERE | |
| - uses: r-hub/actions/setup@v1 | |
| with: | |
| config: ${{ github.event.inputs.config }} | |
| id: rhub-setup | |
| linux-containers: | |
| needs: setup | |
| if: ${{ needs.setup.outputs.containers != '[]' }} | |
| runs-on: ubuntu-latest | |
| name: ${{ matrix.config.label }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: ${{ fromJson(needs.setup.outputs.containers) }} | |
| container: | |
| image: ${{ matrix.config.container }} | |
| steps: | |
| - uses: r-hub/actions/checkout@v1 | |
| - uses: r-hub/actions/platform-info@v1 | |
| with: | |
| token: ${{ secrets.RHUB_TOKEN }} | |
| job-config: ${{ matrix.config.job-config }} | |
| - uses: r-hub/actions/setup-deps@v1 | |
| if: matrix.config.label != 'atlas' && matrix.config.label != 'gcc13' && matrix.config.label != 'mkl' | |
| with: | |
| token: ${{ secrets.RHUB_TOKEN }} | |
| job-config: ${{ matrix.config.job-config }} | |
| pak-version: stable | |
| - name: cachem replacement | |
| if: matrix.config.label == 'atlas' || matrix.config.label == 'gcc13' || matrix.config.label == 'mkl' | |
| run: | | |
| yum install -y gmp-devel pandoc texlive | |
| Rscript -e 'install.packages(c("rcmdcheck", "knitr", "rmarkdown", "Rcpp", "testthat", "DoE.base"), repos = "https://cran.case.edu")' | |
| - name: Environment Variable for nosuggests | |
| if: matrix.config.label == 'nosuggests' | |
| # --extra-arch must be second | |
| # https://github.com/r-hub/containers/blob/main/containers/nosuggests/Dockerfile | |
| run: | | |
| echo "CHECK_ARGS=--ignore-vignettes --extra-arch" >> $GITHUB_ENV | |
| echo "BUILD_ARGS=--no-build-vignettes" >> $GITHUB_ENV | |
| - name: Environment variable for ASAN | |
| if: matrix.config.label == 'clang-asan' | |
| # https://github.com/llvm/llvm-project/issues/59432 | |
| run: | | |
| echo "ASAN_OPTIONS=alloc_dealloc_mismatch=0" >> $GITHUB_ENV | |
| echo "CHECK_ARGS=--ignore-vignettes --extra-arch" >> $GITHUB_ENV | |
| echo "BUILD_ARGS=--no-build-vignettes" >> $GITHUB_ENV | |
| - name: Bad CXXFLAGS for atlas | |
| if: matrix.config.label == 'atlas' | |
| # throws a warning on non-portable compilation flags | |
| # Can't set _R_CHECK_COMPILATION_FLAGS_=FALSE because --as-cran resets it | |
| # instead, allow for the flags that are a problem | |
| run: | | |
| echo '_R_CHECK_COMPILATION_FLAGS_KNOWN_="-Werror=format-security -Werror=implicit-function-declaration -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3"' >> $GITHUB_ENV | |
| - uses: r-hub/actions/run-check@v1 | |
| with: | |
| token: ${{ secrets.RHUB_TOKEN }} | |
| job-config: ${{ matrix.config.job-config }} | |
| other-platforms: | |
| needs: setup | |
| if: ${{ needs.setup.outputs.platforms != '[]' }} | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.label }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: ${{ fromJson(needs.setup.outputs.platforms) }} | |
| steps: | |
| - uses: r-hub/actions/checkout@v1 | |
| - uses: r-hub/actions/setup-r@v1 | |
| with: | |
| job-config: ${{ matrix.config.job-config }} | |
| token: ${{ secrets.RHUB_TOKEN }} | |
| - uses: r-hub/actions/platform-info@v1 | |
| with: | |
| token: ${{ secrets.RHUB_TOKEN }} | |
| job-config: ${{ matrix.config.job-config }} | |
| - uses: r-hub/actions/setup-deps@v1 | |
| with: | |
| job-config: ${{ matrix.config.job-config }} | |
| token: ${{ secrets.RHUB_TOKEN }} | |
| - uses: r-hub/actions/run-check@v1 | |
| with: | |
| job-config: ${{ matrix.config.job-config }} | |
| token: ${{ secrets.RHUB_TOKEN }} |