Merge pull request #46 from bigbio/dev

Remove feature components in favor of quantms-rescoring

README.md

@@ -27,11 +27,6 @@ The following functionalities are available in the package:
 - `openms2sample` - Extra sample information from OpenMS experimental design file. An example of OpenMS experimental design file is available [here](https://github.com/bigbio/quantms-utils/blob/dev/tests/test_data/BSA_design_urls.tsv).
 - `checksamplesheet` - Check the sample sheet for errors and inconsistencies. The experimental design coult be an OpenMS experimental design file or and SDRF file. 
 
-### Features to percolator scripts
-
-- `sage2feature` - The add_sage_feature function enhances an idXML file by appending additional features from a Sage feature table, excluding those generated by 'psm_file'.
-- `spectrum2feature`  - Add the signal-to-noise ratio (SNR) to the feature table for percolator.
-
 ### Other scripts
 
 - `psmconvert` - The convert_psm function converts peptide spectrum matches (PSMs) from an idXML file to a CSV file, optionally filtering out decoy matches. It extracts and processes data from both the idXML and an associated spectra file, handling multiple search engines and scoring systems.

pyproject.toml

@@ -3,7 +3,7 @@ name = "quantms-utils"
 description = "Python scripts and helpers for the quantMS workflow"
 readme = "README.md"
 license = "MIT"
-version = "0.0.18"
+version = "0.0.19"
 authors = [
     "Yasset Perez-Riverol <[email protected]>",
     "Dai Chengxin <[email protected]>",
@@ -55,4 +55,4 @@ target-version = ["py39"]
 
 [build-system]
 requires = ["poetry-core>=1.2.0"]
-build-backend = "poetry.core.masonry.api"
+build-backend = "poetry.core.masonry.api"

quantmsutils/__init__.py

@@ -1 +1 @@
-__version__ = "0.0.18"
+__version__ = "0.0.19"