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Update CHANGES.md in preparation for 0.10.0 release
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massie committed May 13, 2014
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# ADAM #
* ISSUE [242](https://github.com/bigdatagenomics/adam/pull/242): Upgrade to Parquet 1.4.3
* ISSUE [241](https://github.com/bigdatagenomics/adam/pull/241): Fixes to FASTA code to properly handle indices.
* ISSUE [239](https://github.com/bigdatagenomics/adam/pull/239): Make ADAMVCFOutputFormat public
* ISSUE [233](https://github.com/bigdatagenomics/adam/pull/233): Build up reference information during cigar processing
* ISSUE [234](https://github.com/bigdatagenomics/adam/pull/234): Predicate to filter conversion
* ISSUE [235](https://github.com/bigdatagenomics/adam/pull/235): Remove unused contiglength field
* ISSUE [232](https://github.com/bigdatagenomics/adam/pull/232): Add `-pretty` and `-o` to the `print` command
* ISSUE [230](https://github.com/bigdatagenomics/adam/pull/230): Remove duplicate mdtag field
* ISSUE [231](https://github.com/bigdatagenomics/adam/pull/231): Helper scripts to run an ADAM Console.
* ISSUE [226](https://github.com/bigdatagenomics/adam/pull/226): Fix ReferenceRegion from ADAMRecord
* ISSUE [225](https://github.com/bigdatagenomics/adam/pull/225): Change Some to Option to check for unmapped reads
* ISSUE [223](https://github.com/bigdatagenomics/adam/pull/223): Use SparkConf object to configure SparkContext
* ISSUE [217](https://github.com/bigdatagenomics/adam/pull/217): Stop using reference IDs and use reference names instead
* ISSUE [220](https://github.com/bigdatagenomics/adam/pull/220): Update SAM to ADAM conversion
* ISSUE [213](https://github.com/bigdatagenomics/adam/pull/213): BQSR updates

### Version 0.9.0 ###
* ISSUE [214](https://github.com/bigdatagenomics/adam/pull/214): Upgrade to Spark 0.9.1
* ISSUE [211](https://github.com/bigdatagenomics/adam/pull/211): FastaConverter Refactor
* ISSUE [212](https://github.com/bigdatagenomics/adam/pull/212): Cleanup build warnings
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