You can install exdesi by running:
> pip install --user exdesi
On Linux the executable scripts can then be found in ~/.local/bin
and on MacOS the scripts are under /Users/YOURUSERNAME/Library/Python/3.5/bin.
Typical usage is:
> exdesi.py candidate_directory experimental_variables_file
For more options you can ask for help as follows::
> exdesi.py -h
usage: exdesi.py [-h] [--best_set BEST_SET] [-x EXCLUDE] networkfiles experivarfile
positional arguments:
networkfiles directory of influence graphs in SIF format
experivarfile experimental variables
optional arguments:
-h, --help show this help message and exit
--best_set BEST_SET compute best set of experiments maximal number of
experiments, default is OFF, 0=unlimited
-x EXCLUDE, --exclude EXCLUDE
exclude experiments described in file EXCLUDE
Sample files available in the data directory. A sample call would be:
> exdesi.py in_silico_HEK293/candidates_round1/ in_silico_HEK293/expvars.txt -x in_silico_HEK293/exclude1.txt