Update GenPrepFileJob()

[charles-cowart]

Change how GenPrepFileJob() obtains its list of projects to iterate over. Previously this was done by examining the states of other Job() objects. To recover state after a failed job, GenPrepFileJob() will now extract project information from fastq file paths.

[coveralls]

Pull Request Test Coverage Report for Build 8148860467

Warning: This coverage report may be inaccurate.

This pull request's base commit is no longer the HEAD commit of its target branch. This means it includes changes from outside the original pull request, including, potentially, unrelated coverage changes.

• For more information on this, see Tracking coverage changes with pull request builds.
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• For a quick fix, rebase this PR at GitHub. Your next report should be accurate.

Details

• 37 of 37 (100.0%) changed or added relevant lines in 3 files are covered.
• 37 unchanged lines in 3 files lost coverage.
• Overall coverage decreased (-0.3%) to 83.019%

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Files with Coverage Reduction	New Missed Lines	%
sequence_processing_pipeline/Pipeline.py	8	86.67%
sequence_processing_pipeline/tests/test_Pipeline.py	14	89.11%
sequence_processing_pipeline/GenPrepFileJob.py	15	63.85%

Totals
Change from base Build 8056475388:	-0.3%
Covered Lines:	2422
Relevant Lines:	2752

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💛 - Coveralls