Code

Add tellread#149

Code

Merged

antgonza merged 51 commits intobiocore:masterbiocore/mg-scripts:masterfrom charles-cowart:add_tellreadcharles-cowart/mg-scripts:add_tellreadCopy head branch name to clipboardDec 3, 2024

+2,610-368

Commits

Commits on Aug 11, 2024

• initial add

  charles-cowart

  committed
  09dc316

  Copy full SHA for 09dc316

• initial cleanup

  charles-cowart

  committed
  3406cbf

  Copy full SHA for 3406cbf

Commits on Aug 12, 2024

• first pass at converting TELLREAD scripts

  charles-cowart

  committed
  c5540f7

  Copy full SHA for c5540f7

• Second pass at integrating tellread scripts

  charles-cowart

  committed
  5bac0ff

  Copy full SHA for 5bac0ff

• third pass adding tellread

  charles-cowart

  committed
  16ec417

  Copy full SHA for 16ec417

Commits on Aug 14, 2024

• fourth pass

  charles-cowart

  committed
  74cab5d

  Copy full SHA for 74cab5d

Commits on Sep 5, 2024

• Fifth pass, tested on qiita-rc and then refactored.

  charles-cowart

  committed
  a6bde1e

  Copy full SHA for a6bde1e

Commits on Sep 16, 2024

• Manually merged with current master

  charles-cowart

  committed
  1d431a3

  Copy full SHA for 1d431a3

• Manually merged with master

  charles-cowart

  committed
  7a84cd0

  Copy full SHA for 7a84cd0

• Merge branch 'master' into add_tellread

  charles-cowart

  committed
  d347217

  Copy full SHA for d347217

Commits on Sep 17, 2024

• Updates based on testing in qiita-rc

  charles-cowart

  committed
  0236403

  Copy full SHA for 0236403

• flake8

  charles-cowart

  committed
  64583a2

  Copy full SHA for 64583a2

Commits on Sep 19, 2024

• Small fixes

  charles-cowart

  committed
  e7e7c54

  Copy full SHA for e7e7c54

Commits on Sep 24, 2024

• Refactor KISSLoader to be more DRY.

  charles-cowart

  committed
  497738f

  Copy full SHA for 497738f

Commits on Oct 1, 2024

• Pipeline.py updated to support changes in qp-klp

  charles-cowart

  committed
  ca71c1d

  Copy full SHA for ca71c1d

• Version 2.0 of TellSeq support.

  Show description for 6cdc7ba
  charles-cowart

  committed
  6cdc7ba

  Copy full SHA for 6cdc7ba

Commits on Oct 4, 2024

• Creation tests added for new TellReadJob() class.

  charles-cowart

  committed
  6818d44

  Copy full SHA for 6818d44

Commits on Oct 6, 2024

• flake8

  charles-cowart

  committed
  baf35ea

  Copy full SHA for baf35ea

Commits on Oct 7, 2024

• New sample files added

  charles-cowart

  committed
  56fc5be

  Copy full SHA for 56fc5be

Commits on Oct 9, 2024

• Added optional parameter to Pipeline() class.

  Show description for 3372651
  charles-cowart

  committed
  3372651

  Copy full SHA for 3372651

• bugfix

  charles-cowart

  committed
  d883b7b

  Copy full SHA for d883b7b

Commits on Oct 14, 2024

• Fixes error

  Show description for a075cd9
  charles-cowart

  committed
  a075cd9

  Copy full SHA for a075cd9

Commits on Oct 17, 2024

• Merge branch 'biocore:master' into add_tellread

  charles-cowart

  authored
  80d672c

  Copy full SHA for 80d672c

• Rewrote test

  charles-cowart

  committed
  62734d8

  Copy full SHA for 62734d8

Commits on Nov 2, 2024

• Merge branch 'biocore:master' into add_tellread

  charles-cowart

  authored
  e7f2d08

  Copy full SHA for e7f2d08

• Updated branch to use new DFSheet() functionality

  charles-cowart

  committed
  45131f1

  Copy full SHA for 45131f1

Commits on Nov 4, 2024

• Updated to recent changes in metapool

  charles-cowart

  committed
  4665ee8

  Copy full SHA for 4665ee8

Commits on Nov 7, 2024

• Update from testing

  charles-cowart

  committed
  3542df3

  Copy full SHA for 3542df3

Commits on Nov 14, 2024

• Updates to TRIntegrateJob based on testing

  charles-cowart

  committed
  c2c3b06

  Copy full SHA for c2c3b06

• Updated sample config file

  charles-cowart

  committed
  49f1673

  Copy full SHA for 49f1673

• Replaced legacy exit check for tellread

  charles-cowart

  committed
  efc0849

  Copy full SHA for efc0849

Commits on Nov 16, 2024

• recent updates

  charles-cowart

  committed
  4727865

  Copy full SHA for 4727865

Commits on Nov 19, 2024

• Updated tests

  charles-cowart

  committed
  ba1399f

  Copy full SHA for ba1399f

• Update setup.py to point to merged metapool updates

  charles-cowart

  committed
  fd1809b

  Copy full SHA for fd1809b

Commits on Nov 21, 2024

• New tests for slurm polling

  charles-cowart

  committed
  96f3cff

  Copy full SHA for 96f3cff

• Updates

  charles-cowart

  committed
  84edad5

  Copy full SHA for 84edad5

• Updates

  charles-cowart

  committed
  8691147

  Copy full SHA for 8691147

• flake8

  charles-cowart

  committed
  487fc0c

  Copy full SHA for 487fc0c

• Merge branch 'master' into add_tellread

  charles-cowart

  authored
  5b56fd6

  Copy full SHA for 5b56fd6

• flake8 post merger

  charles-cowart

  committed
  4276fc7

  Copy full SHA for 4276fc7

• Fixed older test

  charles-cowart

  committed
  77c10b9

  Copy full SHA for 77c10b9

Commits on Nov 24, 2024

• Minor update

  charles-cowart

  committed
  a67a8a8

  Copy full SHA for a67a8a8

• Remove lengthy comment

  charles-cowart

  committed
  eb36001

  Copy full SHA for eb36001

• fix test

  charles-cowart

  committed
  d69a0c3

  Copy full SHA for d69a0c3

Commits on Nov 25, 2024

• Updates based on feedback

  charles-cowart

  committed
  1649d64

  Copy full SHA for 1649d64

• Update based on feedback

  charles-cowart

  committed
  6569039

  Copy full SHA for 6569039

Commits on Nov 28, 2024

• Added renamed file

  charles-cowart

  committed
  81922b5

  Copy full SHA for 81922b5

Commits on Dec 2, 2024

• Refactored sequence counting job

  Show description for 01d77d6
  charles-cowart

  committed
  01d77d6

  Copy full SHA for 01d77d6

• Update test based on randomness in output generation

  charles-cowart

  committed
  b718e8b

  Copy full SHA for b718e8b

• Updates based on feedback

  charles-cowart

  committed
  a0ffb81

  Copy full SHA for a0ffb81

• Common parse_log() method made default

  charles-cowart

  committed
  0b7ce90

  Copy full SHA for 0b7ce90