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Modified seed prefix to be seed.subsystems
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@nalikapalayoor
nalikapalayoor committed Jan 17, 2025
1 parent f525435 commit 05fde55
Showing 1 changed file with 73 additions and 73 deletions.
146 changes: 73 additions & 73 deletions src/bioregistry/data/bioregistry.json
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Original file line number Diff line number Diff line change
Expand Up @@ -104392,79 +104392,6 @@
"uri_format": "https://sed-ml.org/urns.html#language:$1"
}
},
"seed": {
"biocontext": {
"prefix": "SEED"
},
"contributor_extras": [
{
"email": "[email protected]",
"github": "ialarmedalien",
"name": "AJ Ireland",
"orcid": "0000-0003-1982-9065"
},
{
"email": "[email protected]",
"github": "samseaver",
"name": "Sam Seaver",
"orcid": "0000-0002-7674-5194"
}
],
"go": {
"description": "Project to annotate the first 1000 sequenced genomes, develop detailed metabolic reconstructions, and construct the corresponding stoichiometric matrices",
"homepage": "http://www.theseed.org",
"name": "The SEED;",
"prefix": "SEED",
"uri_format": "http://www.theseed.org/linkin.cgi?id=$1"
},
"mappings": {
"biocontext": "SEED",
"go": "SEED",
"miriam": "seed",
"n2t": "seed",
"ncbi": "SEED"
},
"miriam": {
"deprecated": true,
"description": "This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems.",
"id": "00000552",
"name": "SEED Subsystem",
"namespaceEmbeddedInLui": false,
"pattern": "^\\w+$",
"prefix": "seed",
"sampleId": "Biotin_biosynthesis"
},
"n2t": {
"description": "This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems.",
"example": "Biotin_biosynthesis",
"homepage": "http://seed-viewer.theseed.org/seedviewer.cgi",
"name": "SEED Subsystem at Argonne National Laboratory",
"namespaceEmbeddedInLui": false,
"pattern": "^\\w+$",
"prefix": "seed",
"uri_format": "http://seed-viewer.theseed.org/seedviewer.cgi?page=Subsystems&subsystem=$1"
},
"name": "SEED Subsystem",
"ncbi": {
"example": "fig|83331.1.peg.1",
"homepage": "http://www.theseed.org",
"name": "The SEED Database",
"prefix": "SEED"
},
"publications": [
{
"doi": "10.1093/nar/gki866",
"pmc": "PMC1251668",
"pubmed": "16214803",
"title": "The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes",
"year": 2005
}
],
"repository": "https://github.com/TheSEED",
"synonyms": [
"seed.subsystem"
]
},
"seed.compound": {
"biocontext": {
"prefix": "SEED.COMPOUND"
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"uri_format": "http://modelseed.org/biochem/reactions/$1"
}
},
"seed.subsystems": {
"biocontext": {
"prefix": "SEED.SUBSYSTEMS"
},
"contributor_extras": [
{
"email": "[email protected]",
"github": "ialarmedalien",
"name": "AJ Ireland",
"orcid": "0000-0003-1982-9065"
},
{
"email": "[email protected]",
"github": "samseaver",
"name": "Sam Seaver",
"orcid": "0000-0002-7674-5194"
}
],
"go": {
"description": "Project to annotate the first 1000 sequenced genomes, develop detailed metabolic reconstructions, and construct the corresponding stoichiometric matrices",
"homepage": "http://www.theseed.org",
"name": "The SEED;",
"prefix": "SEED.SUBSYSTEMS",
"uri_format": "http://www.theseed.org/linkin.cgi?id=$1"
},
"mappings": {
"biocontext": "SEED.SUBSYSTEMS",
"go": "SEED.SUBSYSTEMS",
"miriam": "seed.subsystems",
"n2t": "seed.subsystems",
"ncbi": "SEED.SUBSYSTEMS"
},
"miriam": {
"deprecated": true,
"description": "This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems.",
"id": "00000552",
"name": "SEED Subsystem",
"namespaceEmbeddedInLui": false,
"pattern": "^\\w+$",
"prefix": "seed.subsystems",
"sampleId": "Biotin_biosynthesis"
},
"n2t": {
"description": "This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems.",
"example": "Biotin_biosynthesis",
"homepage": "http://seed-viewer.theseed.org/seedviewer.cgi",
"name": "SEED Subsystem at Argonne National Laboratory",
"namespaceEmbeddedInLui": false,
"pattern": "^\\w+$",
"prefix": "seed.subsystems",
"uri_format": "http://seed-viewer.theseed.org/seedviewer.cgi?page=Subsystems&subsystem=$1"
},
"name": "SEED Subsystem",
"ncbi": {
"example": "fig|83331.1.peg.1",
"homepage": "http://www.theseed.org",
"name": "The SEED Database",
"prefix": "SEED.SUBSYSTEMS"
},
"publications": [
{
"doi": "10.1093/nar/gki866",
"pmc": "PMC1251668",
"pubmed": "16214803",
"title": "The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes",
"year": 2005
}
],
"repository": "https://github.com/TheSEED",
"synonyms": [
"seed"
]
},
"seinet": {
"contributor": {
"email": "[email protected]",
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