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Add prefix: seed.role (#1341)
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Closes #1340

---------

Co-authored-by: samseaver <[email protected]>
Co-authored-by: Ben Gyori <[email protected]>
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3 people authored Jan 21, 2025
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34 changes: 34 additions & 0 deletions src/bioregistry/data/bioregistry.json
Original file line number Diff line number Diff line change
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"uri_format": "http://modelseed.org/biochem/reactions/$1"
}
},
"seed.role": {
"contributor": {
"github": "samseaver",
"name": "Sam Seaver",
"orcid": "0000-0002-7674-5194"
},
"description": "With the growing number of available genomes, the need for an environment to support effective comparative analysis increases. The original SEED Project was started in 2003 by the [Fellowship for Interpretation of Genomes (FIG)](http://thefig.info/) as a largely unfunded open source effort. Argonne National Laboratory and the University of Chicago joined the project, and now much of the activity occurs at those two institutions (as well as the University of Illinois at Urbana-Champaign, Hope college, San Diego State University, the Burnham Institute and a number of other institutions). The cooperative effort focuses on the development of the comparative genomics environment called the SEED and, more importantly, on the development of curated genomic data.\nThis prefix provides identifiers for molecular roles that describe the function of one or more proteins in microbes and plants.",
"example": "Histidinol dehydrogenase (EC 1.1.1.23)",
"example_extras": [
"Archease",
"Xylan oligosaccharide ABC transporter, substrate-binding component"
],
"github_request_issue": 1340,
"homepage": "https://theseed.org/",
"license": "MIT",
"name": "The SEED",
"publications": [
{
"doi": "10.1093/nar/gki866",
"pmc": "PMC1251668",
"pubmed": "16214803",
"title": "The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes",
"year": 2005
}
],
"repository": "https://github.com/orgs/TheSEED",
"reviewer": {
"email": "[email protected]",
"github": "bgyori",
"name": "Benjamin M. Gyori",
"orcid": "0000-0001-9439-5346"
},
"uri_format": "https://pubseed.theseed.org/SubsysEditor.cgi?page=FunctionalRolePage&fr=$1"
},
"seed.subsystem": {
"biocontext": {
"prefix": "SEED"
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