Add prefix: dome (#1374)

This pull request curates a new prefix 'dome', which is a set of papers related to machine learning related publications. Machine learning has lots of applications in life sciences, which is why I decided it would be relevant to the bioregistry. This PR updates the json and tsv files. This PR is the updated version of #1373 but with correct branching. https://pubmed.ncbi.nlm.nih.gov/39661723/ --------- Co-authored-by: Ben Gyori <[email protected]>
biopragmatics · Jan 24, 2025 · 8bd8b65 · 8bd8b65
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diff --git a/src/bioregistry/data/bioregistry.json b/src/bioregistry/data/bioregistry.json
@@ -28681,6 +28681,42 @@
     },
     "name": "Descriptive Ontology for Linguistic and Cognitive Engineering"
   },
+  "dome": {
+    "contact": {
+      "email": "[email protected]",
+      "github": "silvio-tosatto",
+      "name": "Silvio Tosatto",
+      "orcid": "0000-0003-4525-7793"
+    },
+    "contributor": {
+      "email": "[email protected]",
+      "github": "nalikapalayoor",
+      "name": "Nalika Palayoor",
+      "orcid": "0009-0008-8406-631X"
+    },
+    "description": "The DOME registry is a curated set of papers related to machine learning methods in biology, each with its own unique DOME identifier.",
+    "example": "dfyn1yvtz3",
+    "github_request_issue": 1374,
+    "homepage": "https://registry.dome-ml.org",
+    "name": "DOME Registry",
+    "pattern": "^[a-z0-9]{10}$",
+    "publications": [
+      {
+        "doi": "10.1093/gigascience/giae094",
+        "pmc": "PMC11633452",
+        "pubmed": "39661723",
+        "title": "DOME Registry: implementing community-wide recommendations for reporting supervised machine learning in biology",
+        "year": 2024
+      }
+    ],
+    "reviewer": {
+      "email": "[email protected]",
+      "github": "bgyori",
+      "name": "Benjamin M. Gyori",
+      "orcid": "0000-0001-9439-5346"
+    },
+    "uri_format": "https://registry.dome-ml.org/review/$1"
+  },
   "dommino": {
     "biocontext": {
       "prefix": "DOMMINO"

diff --git a/src/bioregistry/data/curated_papers.tsv b/src/bioregistry/data/curated_papers.tsv
@@ -134,6 +134,7 @@ pubmed	relevant	orcid	date_curated	relevancy_type	pr_added	notes
 39659497	0	0009-0008-8406-631X	2025-01-07	irrelevant_other	1351	
 39660292	0	0009-0008-8406-631X	2025-01-07	irrelevant_other	1351	
 39660842	0	0009-0008-8406-631X	2025-01-17	not_identifiers_resource	1364	
+39661723	1	0009-0008-8406-631X	2025-01-21	new_prefix	1374	
 39670819	0	0009-0008-8406-631X	2025-01-10	irrelevant_other	1351	
 39672676	0	0009-0008-8406-631X	2025-01-14	irrelevant_other	1364	
 39684768	0	0009-0008-8406-631X	2025-01-14	irrelevant_other	1364