Improve complexportal xrefs

biopragmatics · Jan 8, 2024 · c1eccb2 · c1eccb2
1 parent 5bf8303
commit c1eccb2
Showing 1 changed file with 7 additions and 0 deletions.
diff --git a/src/pyobo/sources/complexportal.py b/src/pyobo/sources/complexportal.py
@@ -82,8 +82,15 @@ def _parse_xrefs(s) -> List[Tuple[Reference, str]]:
             logger.warning("xref missing (: %s", xref)
             continue
         note = note.rstrip(")")
+        note.replace("rhea:rhea ", "rhea:")
+        note.replace("rhea:Rhea ", "rhea:")
+        note.replace("eccode::", "eccode:")
+        note.replace("eccode:EC:", "eccode:")
+        note.replace("eccode:RHEA:", "rhea:")
         if note.lower().startswith("rhea "):
             note = note[len("Rhea ") :]
+            if note.lower().startswith("rhea:rhea "):
+                note = note[len("rhea:rhea ") :]
         if note.lower().startswith("EC:"):
             note = note[len("EC:") :]
         try: