Clean up

.github/workflows/tests.yml

@@ -36,7 +36,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: [ "3.9", "3.12" ]
+        python-version: [ "3.12" ]
     steps:
       - uses: actions/checkout@v2
       - name: Set up Python ${{ matrix.python-version }}
@@ -46,7 +46,7 @@ jobs:
       - name: Install dependencies
         run: |
           sudo apt-get install graphviz
-          pip install tox
+          pip install tox tox-uv
       - name: Check RST conformity with doc8
         run: tox -e doc8
       - name: Check README.rst
@@ -60,7 +60,6 @@ jobs:
       matrix:
         os: [ ubuntu-latest ]
         python-version: [ "3.9", "3.12" ]
-        pydantic: [ "pydantic1", "pydantic2" ]
         exclude:
           - os: windows-latest
             python-version: 3.9
@@ -73,7 +72,7 @@ jobs:
       - name: Install dependencies
         run: |
           sudo apt-get install graphviz
-          pip install tox
+          pip install tox tox-uv
       - name: Test with pytest
         run:
-          tox -e py-${{ matrix.pydantic }}
+          tox -e py

setup.cfg

@@ -59,12 +59,13 @@ install_requires =
     tabulate
     cachier
     pystow>=0.2.7
-    bioversions>=0.5.202
+    bioversions>=0.5.514
     bioregistry>=0.10.20
     bioontologies>=0.4.0
     zenodo-client>=0.0.5
     class_resolver
     psycopg2-binary
+    pydantic>=2.0
     # Resource Downloaders
     drugbank_downloader
     chembl_downloader