fix: fixed log

biosimulators · Nov 8, 2021 · 32fc94e · 32fc94e
1 parent 1fc39e9
commit 32fc94e
Show file tree

Hide file tree

Showing 4 changed files with 6 additions and 3 deletions.
diff --git a/Dockerfile b/Dockerfile
@@ -14,7 +14,7 @@
 # Base OS
 FROM python:3.9-slim-buster
 
-ARG VERSION="0.1.19"
+ARG VERSION="0.1.20"
 ARG SIMULATOR_VERSION="0.22.1"
 
 # metadata

diff --git a/biosimulators_cobrapy/_version.py b/biosimulators_cobrapy/_version.py
@@ -1 +1 @@
-__version__ = '0.1.19'
+__version__ = '0.1.20'
diff --git a/biosimulators_cobrapy/core.py b/biosimulators_cobrapy/core.py
@@ -181,7 +181,7 @@ def exec_sed_task(task, variables, preprocessed_task=None, log=None, config=None
 
     # log action
     if config.LOG:
-        log.algorithm = preprocessed_task['simulation']['algorithm_kisao_id'],
+        log.algorithm = preprocessed_task['simulation']['algorithm_kisao_id']
         log.simulator_details = {
             'method': method_props['method'].__module__ + '.' + method_props['method'].__name__,
             'arguments': method_kw_args,

diff --git a/tests/test_core_main.py b/tests/test_core_main.py
@@ -25,6 +25,7 @@
 import cobra
 import datetime
 import dateutil.tz
+import json
 import numpy
 import numpy.testing
 import os
@@ -370,6 +371,8 @@ def test_exec_sedml_docs_in_combine_archive_successfully(self):
         if log.exception:
             raise log.exception
 
+        json.dumps(log.to_json())
+
         self._assert_combine_archive_outputs(doc, out_dir)
 
     def _build_combine_archive(self, model_changes=None, algorithm=None):