fixed builder in demo

biosimulators · Mar 1, 2024 · df662c9 · df662c9
1 parent 7d19249
commit df662c9
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Showing 2 changed files with 6 additions and 25 deletions.
diff --git a/biosimulator_processes/biosimulator_builder.py b/biosimulator_processes/biosimulator_builder.py
@@ -4,6 +4,6 @@
 
 
 class BiosimulatorBuilder(Builder):
-    def __init__(self, schema: Dict, tree: Dict, filepath: str):
+    def __init__(self, schema: Dict = None, tree: Dict = None, filepath: str = None):
         super().__init__(schema=schema, tree=tree, file_path=filepath, core=CORE)
 
diff --git a/notebooks/builder_composer.ipynb b/notebooks/builder_composer.ipynb
@@ -15,7 +15,10 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from builder import Builder, Process, ProcessTypes"
+    "from builder import Builder, Process\n",
+    "from biosimulator_processes import CORE\n",
+    "from biosimulator_processes.data_model import *\n",
+    "from biosimulator_processes.biosimulator_builder import BiosimulatorBuilder"
    ]
   },
   {
@@ -26,38 +29,16 @@
     "## Initialize the builder"
    ]
   },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "id": "23ae6471dca4692b",
-   "metadata": {
-    "collapsed": false
-   },
-   "outputs": [],
-   "source": [
-    "from biosimulator_processes import CORE"
-   ]
-  },
   {
    "cell_type": "code",
    "execution_count": null,
    "id": "b6260555-2bad-4834-adc5-e6d358063579",
    "metadata": {},
    "outputs": [],
    "source": [
-    "b = Builder(core=CORE)"
+    "b = BiosimulatorBuilder()"
    ]
   },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "id": "deceb0daee61b0ce",
-   "metadata": {
-    "collapsed": false
-   },
-   "outputs": [],
-   "source": []
-  },
   {
    "cell_type": "markdown",
    "id": "dd85f98e-c5e3-467b-97ab-1ced7e810a17",