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43 changes: 37 additions & 6 deletions FAQ.html
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<script src="_static/js/petite-vue.js"></script>
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
<link rel="next" title="📚 Training for new employees" href="training_materials/basics.html" />
<link rel="next" title="Access to Benchling and its data" href="benchling_access.html" />
<link rel="prev" title="📩 Contact us" href="contact.html" />
</head><body data-dark_mode_code_blocks="true">

Expand Down Expand Up @@ -130,6 +130,9 @@ <h3 id="searchlabel">Quick search</h3>
<li class="toctree-l1 current"><a class="current reference internal" href="#">❓ FAQ</a></li>
</ul>
<ul>
<li class="toctree-l1"><a class="reference internal" href="benchling_access.html">🔐 Benchling access</a></li>
</ul>
<ul>
<li class="toctree-l1"><a class="reference internal" href="training_materials/basics.html">📚 Training for new employees</a></li>
</ul>
<p class="caption" role="heading"><span class="caption-text">Registering data</span></p>
Expand Down Expand Up @@ -161,7 +164,9 @@ <h3 id="searchlabel">Quick search</h3>

<section class="tex2jax_ignore mathjax_ignore" id="faq">
<h1>❓ FAQ<a class="headerlink" href="#faq" title="Link to this heading"></a></h1>
<p><strong><mark style="background-color: #C5DBEC;">Accessing Benchling</mark></strong></p>
<section id="accessing-benchling">
<h2>Accessing Benchling<a class="headerlink" href="#accessing-benchling" title="Link to this heading"></a></h2>
<br/>
<details class="sd-sphinx-override sd-dropdown sd-card sd-mb-3">
<summary class="sd-summary-title sd-card-header">
<span class="sd-summary-text">How can I get access to Benchling?</span><span class="sd-summary-state-marker sd-summary-chevron-right"><svg version="1.1" width="1.5em" height="1.5em" class="sd-octicon sd-octicon-chevron-right" viewBox="0 0 24 24" aria-hidden="true"><path d="M8.72 18.78a.75.75 0 0 1 0-1.06L14.44 12 8.72 6.28a.751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018l6.25 6.25a.75.75 0 0 1 0 1.06l-6.25 6.25a.75.75 0 0 1-1.06 0Z"></path></svg></span></summary><div class="sd-summary-content sd-card-body docutils">
Expand All @@ -178,10 +183,13 @@ <h1>❓ FAQ<a class="headerlink" href="#faq" title="Link to this heading">¶</a>
<p class="sd-card-text">If your account was suspended, contact lims_support&#64;biosustain.dtu.dk and ask for its reactivation.
Reasons for the suspension include inactivity for multiple months or being a past employee that has returned to Biosustain after a period of time.</p>
</div>
</details><p><strong><mark style="background-color: #C5DBEC;">Sharing Benchling data</mark></strong></p>
</details></section>
<section id="sharing-data">
<h2>Sharing data<a class="headerlink" href="#sharing-data" title="Link to this heading"></a></h2>
<br/>
<details class="sd-sphinx-override sd-dropdown sd-card sd-mb-3">
<summary class="sd-summary-title sd-card-header">
<span class="sd-summary-text">How can I grant a colleague access to my data in Benchling?</span><span class="sd-summary-state-marker sd-summary-chevron-right"><svg version="1.1" width="1.5em" height="1.5em" class="sd-octicon sd-octicon-chevron-right" viewBox="0 0 24 24" aria-hidden="true"><path d="M8.72 18.78a.75.75 0 0 1 0-1.06L14.44 12 8.72 6.28a.751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018l6.25 6.25a.75.75 0 0 1 0 1.06l-6.25 6.25a.75.75 0 0 1-1.06 0Z"></path></svg></span></summary><div class="sd-summary-content sd-card-body docutils">
<span class="sd-summary-text">How can I grant a colleague access to my data in Benchling?</span><span class="sd-summary-state-marker sd-summary-chevron-right"><svg version="1.1" width="1.5em" height="1.5em" class="sd-octicon sd-octicon-chevron-right" viewBox="0 0 24 24" aria-hidden="true"><path d="M8.72 18.78a.75.75 0 0 1 0-1.06L14.44 12 8.72 6.28a.751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018l6.25 6.25a.75.75 0 0 1 0 1.06l-6.25 6.25a.75.75 0 0 1-1.06 0Z"></path></svg></span></summary><div class="sd-summary-content sd-card-body docutils">
<p class="sd-card-text">Make sure they are included in the collaborators of your Benchling project.</p>
<ul class="simple">
<li><p class="sd-card-text">If they are part of your team, <a class="reference external" href="https://help.benchling.com/hc/en-us/articles/9684243670029-Add-or-remove-members-of-a-team-Enterprise" rel="noopener noreferrer" target="_blank">add them in the Benchling Team</a> of your research group and <a class="reference external" href="https://help.benchling.com/hc/en-us/articles/9684263074445-Set-project-permissions" rel="noopener noreferrer" target="_blank">add the Team as collaborator in your project</a>.</p></li>
Expand All @@ -193,7 +201,10 @@ <h1>❓ FAQ<a class="headerlink" href="#faq" title="Link to this heading">¶</a>
<span class="sd-summary-text">How can I grant an external collaborator access to my data in Benchling?</span><span class="sd-summary-state-marker sd-summary-chevron-right"><svg version="1.1" width="1.5em" height="1.5em" class="sd-octicon sd-octicon-chevron-right" viewBox="0 0 24 24" aria-hidden="true"><path d="M8.72 18.78a.75.75 0 0 1 0-1.06L14.44 12 8.72 6.28a.751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018l6.25 6.25a.75.75 0 0 1 0 1.06l-6.25 6.25a.75.75 0 0 1-1.06 0Z"></path></svg></span></summary><div class="sd-summary-content sd-card-body docutils">
<p class="sd-card-text">An external collaborator cannot access the Biosustain instance of Benchling without having a DTU guest agreement and credentials. Please contact <a class="reference external" href="https://www.inside.dtu.dk/en/medarbejder/hr-og-arbejdsmiljoe/kontakt-hr" rel="noopener noreferrer" target="_blank">Biosustain HR</a> if you want to initialize the process of guest registration.</p>
</div>
</details><p><strong><mark style="background-color: #C5DBEC;">Exporting/transfering Benchling data</mark></strong></p>
</details></section>
<section id="exporting-data">
<h2>Exporting data<a class="headerlink" href="#exporting-data" title="Link to this heading"></a></h2>
<br/>
<details class="sd-sphinx-override sd-dropdown sd-card sd-mb-3">
<summary class="sd-summary-title sd-card-header">
<span class="sd-summary-text">How can I export data from Benchling?</span><span class="sd-summary-state-marker sd-summary-chevron-right"><svg version="1.1" width="1.5em" height="1.5em" class="sd-octicon sd-octicon-chevron-right" viewBox="0 0 24 24" aria-hidden="true"><path d="M8.72 18.78a.75.75 0 0 1 0-1.06L14.44 12 8.72 6.28a.751.751 0 0 1 .018-1.042.751.751 0 0 1 1.042-.018l6.25 6.25a.75.75 0 0 1 0 1.06l-6.25 6.25a.75.75 0 0 1-1.06 0Z"></path></svg></span></summary><div class="sd-summary-content sd-card-body docutils">
Expand All @@ -206,13 +217,33 @@ <h1>❓ FAQ<a class="headerlink" href="#faq" title="Link to this heading">¶</a>
<p class="sd-card-text">There is no automatic way to trasfer file across instances (for example, from your Biosustain account to a free version account). In order to achieve it, you can follow <a class="reference external" href="https://biosustain.github.io/benchling-resources/guides/transfer_data_guests.html" rel="noopener noreferrer" target="_blank">this guide</a> that explains the step to follow to transfer the data manually.</p>
</div>
</details></section>
</section>


<div class="clearer"></div>
</div>
</div>
</div>

<div id="show_right_sidebar">
<p><a class="toggle_right_sidebar" href="#"><span class="icon">&lt;</span><span>Page contents</span></a></p>
</div>

<div id="right_sidebar">
<p><a class="toggle_right_sidebar" href="#"><span class="icon">&gt;</span><span>Page contents:</span></a></p>
<div class="page_toc">
<ul>
<li><a class="reference internal" href="#">❓ FAQ</a><ul>
<li><a class="reference internal" href="#accessing-benchling">Accessing Benchling</a></li>
<li><a class="reference internal" href="#sharing-data">Sharing data</a></li>
<li><a class="reference internal" href="#exporting-data">Exporting data</a></li>
</ul>
</li>
</ul>

</div>
</div>


<div class="clearer"></div>
</div>
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<div class="right">

<a href="training_materials/basics.html"><span>📚 Training for new employees</span><span class="icon">&gt;</span></a>
<a href="benchling_access.html"><span>Access to Benchling and its data</span><span class="icon">&gt;</span></a>

</div>
</div>
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# ❓ FAQ

**<mark style="background-color: #C5DBEC;">Accessing Benchling</mark>**
## Accessing Benchling
<br/>

```{dropdown} How can I get access to Benchling?
First-time access is granted by HR. Contact [Biosustain HR](https://www.inside.dtu.dk/en/medarbejder/hr-og-arbejdsmiljoe/kontakt-hr) to request access (for you or a colleague).
Expand All @@ -15,9 +16,10 @@ If your account was suspended, contact [email protected] and ask fo
Reasons for the suspension include inactivity for multiple months or being a past employee that has returned to Biosustain after a period of time.
```

**<mark style="background-color: #C5DBEC;">Sharing Benchling data</mark>**
## Sharing data
<br/>

```{dropdown} How can I grant a colleague access to my data in Benchling?
```{dropdown} How can I grant a colleague access to my data in Benchling?
Make sure they are included in the collaborators of your Benchling project.
- If they are part of your team, [add them in the Benchling Team](https://help.benchling.com/hc/en-us/articles/9684243670029-Add-or-remove-members-of-a-team-Enterprise) of your research group and [add the Team as collaborator in your project](https://help.benchling.com/hc/en-us/articles/9684263074445-Set-project-permissions).
- If they are not part of your team, [add them directly as collaborator](https://help.benchling.com/hc/en-us/articles/9684263074445-Set-project-permissions) in your project.
Expand All @@ -27,7 +29,8 @@ Make sure they are included in the collaborators of your Benchling project.
An external collaborator cannot access the Biosustain instance of Benchling without having a DTU guest agreement and credentials. Please contact [Biosustain HR](https://www.inside.dtu.dk/en/medarbejder/hr-og-arbejdsmiljoe/kontakt-hr) if you want to initialize the process of guest registration.
```

**<mark style="background-color: #C5DBEC;">Exporting/transfering Benchling data</mark>**
## Exporting data
<br/>

```{dropdown} How can I export data from Benchling?
To export data from Benchling, please check this [Benchling official guide](https://help.benchling.com/hc/en-us/articles/9684256299533-Export-data-from-Notebook-Registry-and-Inventory).
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56 changes: 56 additions & 0 deletions _sources/benchling_access.md.txt
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# Access to Benchling and its data

🎯 This guide provides an overview of how **permissions** are managed in Benchling, as well as [whom to contact](#contact-information) for different permission-related issues.

## Access to Benchling
**First-time access** is granted by HR. Contact [Biosustain HR](https://www.inside.dtu.dk/en/medarbejder/hr-og-arbejdsmiljoe/kontakt-hr) to request access (for you or a colleague).

If your account (or a colleague's account) has been **suspended**, contact [LIMS Support](/contact.md) and ask for its reactivation.
Reasons for the suspension include inactivity for multiple months or being a past employee that has returned to Biosustain after a period of time.

## Access to a Benchling Team

A **Team** is a collection of users who can be granted access to projects collectively, simplifying permission management. You can add a Team as collaborator in your Project to share your data to all the members of the Team.

Once a new user has logged-in into Benchling for the first time (**not before that**), the user can be added to a Benchling Team by a Team Admin.

- [How to add a user to your Benchling Team](https://help.benchling.com/hc/en-us/articles/9684243670029-Add-or-remove-members-of-a-team-Enterprise) (note that only Team Admins can add new users to a Team)

_Note: If you cannot see the icon "**Add Member**" in your Team, it means that you are not a Team Admin. Ask the Team Admin to change your role, if needed._

## Access to a Benchling Project

A **Project** is a workspace for storing and organizing research data. In Benchling,permissions to access data are assigned at the project level. A Project Admin can add people to a Project (either a single user or a full Team, with Viewer, Editor or Admin role).

- [How to add a user or a Team as collaborator in your project](https://help.benchling.com/hc/en-us/articles/9684263074445-Set-project-permissions)

_Note: If you cannot add/edit collaborators in your Project, it means that you are not a Project Admin. Ask the Project Admin to change your role, if needed._

### Project permission options
<br/>

| Role | Permissions |
|-------|------------|
| **Admin** | Can view and create Notebook entries and other data types in the project, edit existing data, and manage project permissions. |
| **Write** | Can view and create Notebook entries and other data types in the project, and edit existing data.
| **Read** | Can only view Notebook entries and data but cannot create or modify them. |
| **None** | No access—cannot view, edit, or create any data in the project. |


## Access for external collaborators

An external collaborator cannot access the Biosustain instance of Benchling without having a DTU guest agreement and credentials. Please contact [Biosustain HR](https://www.inside.dtu.dk/en/medarbejder/hr-og-arbejdsmiljoe/kontakt-hr) if you want to initialize the process of guest registration.

(contact-information)=
## Contact information
<br/>

| Goal | Responsible |
|----------------------------|-------------------------------|
| First time access for Biosustain employees | [Biosustain HR](https://www.inside.dtu.dk/en/medarbejder/) |
| External collaborators' access | [Biosustain HR](https://www.inside.dtu.dk/en/medarbejder/) |
| Unsuspension of account | [LIMS Support](/contact.md) |
| Adding a user to a Team | Team admin |
| Adding a user to a Project | Project admin |
| General Benchling troubleshooting | [LIMS Support](/contact.md) |

15 changes: 13 additions & 2 deletions _sources/index.md.txt
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The **Biosustain Benchling Resources Page** will help you navigate Benchling and successfully track and manage your experimental data during your time at Biosustain.

For a whole-round introduction to the platform, we suggest you to check-out the [_Introduction to Benchling_](/training_materials/basics.md) learing materials (or to directly attend one of our Benchling training session!).

Not all functionalities are covered by our guides. If you cannot find what you are looking for here, you can learn more about specific functionalities in [_Benchling Learning Labs_](https://www.benchling.com/learning-labs), an learning platform administered by Benchling. The courses offered help you build essential Benchling knowledge and skills at any time. Plus, career-building and role-specific badges to to showcase your learnings..

Here you will find <mark style="background-color: #C5DBEC;">step-by-step tutorials and short training videos</mark>.

## Benchling in a nutshell:
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:maxdepth: 1
:hidden:

📩 Contact us <contact>
📩 Contact us <contact.md>
```

```{toctree}
:maxdepth: 1
:hidden:

❓ FAQ <FAQ.md>
```

```{toctree}
:maxdepth: 1
:hidden:

❓ FAQ <FAQ>
🔐 Benchling access <benchling_access.md>
```

```{toctree}
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- **"Introduction to the Molecular Biology Tools"**

If you missed the training, you can find <mark style="background-color: #C5DBEC;">all the training materials</mark> down-below.
<br/><br/><br/>
⏳ _The loading of the PowerPoints can take some seconds as the file size is quite big_ ⏳

## Introduction to Benchling

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