Merge branch 'main' into doc/joss

bjlittle · Aug 31, 2024 · 32f8395 · 32f8395
2 parents fbe9366 + fbf9d47
commit 32f8395
Show file tree

Hide file tree

Showing 117 changed files with 2,201 additions and 1,439 deletions.
diff --git a/.all-contributorsrc b/.all-contributorsrc
@@ -8,7 +8,7 @@
   ],
   "commit": true,
   "commitConvention": "none",
-  "contributorsPerLine": 7,
+  "contributorsPerLine": 5,
   "contributorsSortAlphabetically": true,
   "imageSize": 100,
   "linkToUsage": true,
@@ -34,7 +34,8 @@
         "eventOrganizing",
         "mentoring",
         "design",
-        "tutorial"
+        "tutorial",
+        "promotion"
       ]
     },
     {
@@ -152,7 +153,9 @@
         "question",
         "eventOrganizing",
         "translation",
-        "review"
+        "review",
+        "promotion",
+        "mentoring"
       ]
     },
     {
@@ -172,7 +175,8 @@
       "contributions": [
         "bug",
         "promotion",
-        "ideas"
+        "ideas",
+        "talk"
       ]
     },
     {
@@ -371,6 +375,25 @@
         "ideas",
         "promotion"
       ]
+    },
+    {
+      "login": "berndbecker",
+      "name": "berndbecker",
+      "avatar_url": "https://avatars.githubusercontent.com/u/68229540?v=4",
+      "profile": "https://github.com/berndbecker",
+      "contributions": [
+        "ideas"
+      ]
+    },
+    {
+      "login": "sit23",
+      "name": "Stephen Thomson",
+      "avatar_url": "https://avatars.githubusercontent.com/u/10164528?v=4",
+      "profile": "http://emps.exeter.ac.uk/mathematics/staff/sit204",
+      "contributions": [
+        "example",
+        "video"
+      ]
     }
   ],
   "commitType": "docs"

diff --git a/.github/workflows/ci-update-pr-branch.yml b/.github/workflows/ci-update-pr-branch.yml
@@ -20,7 +20,7 @@ jobs:
           private_key: ${{ secrets.AUTH_APP_PRIVATE_KEY }}
 
       - name: "automatically update PR"
-        uses: adRise/update-pr-branch@v0.8.1
+        uses: adRise/update-pr-branch@v0.9.0
         with:
           token: ${{ steps.generate-token.outputs.token }}
           base: "main"

diff --git a/.gitignore b/.gitignore
@@ -82,7 +82,7 @@ instance/
 
 # Sphinx documentation
 docs/_build/
-docs/src/gallery-carousel.txt
+docs/src/gallery_carousel.txt
 docs/src/generated
 docs/src/reference/generated
 docs/src/tags

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -8,36 +8,25 @@ ci:
   autoupdate_commit_msg: "chore: update pre-commit hooks"
 
 repos:
-  - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: "v4.6.0"
+  - repo: https://github.com/abravalheri/validate-pyproject
+    rev: "v0.19"
+    hooks:
+      - id: validate-pyproject
+
+  - repo: https://github.com/adamchainz/blacken-docs
+    rev: "1.18.0"
     hooks:
-    - id: check-added-large-files
-      exclude: "tests/plotting/image_cache"
-      # Prevent giant files from being committed.
-    - id: check-ast
-      # Check whether files parse as valid Python.
-    - id: check-case-conflict
-      # Check for file name conflicts on case-insensitive file-systems.
-    - id: check-merge-conflict
-      # Check for files that contain merge conflict strings.
-    - id: debug-statements
-      # Check for debugger imports and py37+ `breakpoint()` calls in Python source.
-    - id: check-toml
-      # Check TOML file syntax.
-    - id: check-yaml
-      # Check YAML file syntax.
-    - id: end-of-file-fixer
-      # Makes sure files end in a newline and only a newline.
-      exclude_types: [svg]
-    - id: mixed-line-ending
-      # Replaces or checks mixed line ending.
-    - id: no-commit-to-branch
-      # Don't commit to main branch.
-    - id: trailing-whitespace
-      # Trims trailing whitespace.
+      - id: blacken-docs
+        additional_dependencies: [black==24.*]
+
+  - repo: https://github.com/aio-libs/sort-all
+    rev: "v1.2.0"
+    hooks:
+      - id: sort-all
+        types: [file, python]
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: "v0.5.2"
+    rev: "v0.6.2"
     hooks:
       - id: ruff
         types: [file, python]
@@ -48,15 +37,45 @@ repos:
   - repo: https://github.com/codespell-project/codespell
     rev: "v2.3.0"
     hooks:
-    - id: codespell
-      types_or: [python, markdown, rst]
-      additional_dependencies: [tomli]
+      - id: codespell
+        types_or: [python, markdown, rst]
+        additional_dependencies: [tomli]
 
-  - repo: https://github.com/adamchainz/blacken-docs
-    rev: "1.18.0"
+  - repo: https://github.com/numpy/numpydoc
+    rev: v1.8.0
     hooks:
-      - id: blacken-docs
-        additional_dependencies: [black==24.*]
+      - id: numpydoc-validation
+        files: "^src/"
+        exclude: "^src/geovista/examples/"
+        types: [file, python]
+
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: "v4.6.0"
+    hooks:
+      - id: check-added-large-files
+        exclude: "tests/plotting/image_cache"
+        # Prevent giant files from being committed.
+      - id: check-ast
+        # Check whether files parse as valid Python.
+      - id: check-case-conflict
+        # Check for file name conflicts on case-insensitive file-systems.
+      - id: check-merge-conflict
+        # Check for files that contain merge conflict strings.
+      - id: debug-statements
+        # Check for debugger imports and py37+ `breakpoint()` calls in Python source.
+      - id: check-toml
+        # Check TOML file syntax.
+      - id: check-yaml
+        # Check YAML file syntax.
+      - id: end-of-file-fixer
+        # Makes sure files end in a newline and only a newline.
+        exclude_types: [svg]
+      - id: mixed-line-ending
+        # Replaces or checks mixed line ending.
+      - id: no-commit-to-branch
+        # Don't commit to main branch.
+      - id: trailing-whitespace
+        # Trims trailing whitespace.
 
   - repo: https://github.com/pre-commit/pygrep-hooks
     rev: v1.10.0
@@ -77,35 +96,16 @@ repos:
       - id: text-unicode-replacement-char
         # Forbid files which have a UTF-8 Unicode replacement character.
 
-  - repo: https://github.com/aio-libs/sort-all
-    rev: "v1.2.0"
-    hooks:
-      - id: sort-all
-        types: [file, python]
-
-  - repo: https://github.com/abravalheri/validate-pyproject
-    rev: "v0.18"
-    hooks:
-      - id: validate-pyproject
-
   - repo: https://github.com/python-jsonschema/check-jsonschema
-    rev: 0.29.0
+    rev: 0.29.2
     hooks:
       - id: check-dependabot
       - id: check-github-workflows
       - id: check-readthedocs
 
   - repo: https://github.com/scientific-python/cookie
-    rev: 2024.04.23
+    rev: 2024.08.19
     hooks:
       - id: sp-repo-review
         additional_dependencies: ["repo-review[cli]"]
         args: ["--show=errskip"]
-
-  - repo: https://github.com/numpy/numpydoc
-    rev: v1.7.0
-    hooks:
-      - id: numpydoc-validation
-        files: "^src/"
-        exclude: "^src/geovista/examples/"
-        types: [file, python]
diff --git a/.readthedocs.yml b/.readthedocs.yml
@@ -3,7 +3,7 @@ version: 2
 build:
   os: ubuntu-22.04
   tools:
-    python: mambaforge-22.9
+    python: mambaforge-23.11
   apt_packages:
     - libgl1-mesa-dev
     - xvfb

diff --git a/CHANGELOG.rst b/CHANGELOG.rst