Run: tutorial_phantom_elekta #29
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Workflow to test Brainstorm source on GitHub-Hosted Linux, Windows and macOS runners | |
| # Workflow name | |
| name: Run tutorial (on Brainstorm source) | |
| # Parameters | |
| env: | |
| MATLAB_VER: R2021b # Oldest "b" release available for Windows runner | |
| # When the workflow will run | |
| on: | |
| # Run on Push to a given branch | |
| push: | |
| branches: | |
| - fake-branch | |
| # Run manually from GitHub Actions tab, it must be in the default branch | |
| workflow_dispatch: | |
| # Inputs that appear on GitHub | |
| inputs: | |
| testname: | |
| type: choice | |
| description: Test to run | |
| options: | |
| - tutorial_introduction | |
| - tutorial_connectivity | |
| - tutorial_coherence | |
| - tutorial_ephys | |
| - tutorial_epilepsy | |
| - tutorial_epileptogenicity | |
| - tutorial_fem_tensors | |
| - tutorial_neuromag | |
| - tutorial_phantom_ctf | |
| - tutorial_phantom_elekta | |
| - tutorial_practicalmeeg | |
| - tutorial_raw | |
| - tutorial_resting | |
| - tutorial_simulations | |
| - tutorial_yokogawa | |
| required: true | |
| bstusername: | |
| description: Brainstorm username to send email | |
| required: true | |
| default: '' | |
| # Name for each run | |
| run-name: "Run: ${{ github.event.inputs.testname }}" | |
| jobs: | |
| # Ubuntu job | |
| Run-Ubuntu: | |
| name: Run on Linux (Ubuntu 20.04) | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| # Get the Brainstorm code to test | |
| - name: Checkout 'brainstorm3' in 'brainstorm3' | |
| uses: actions/checkout@v3 | |
| with: | |
| path: brainstorm3 | |
| # Setting Matlab, if done after 2nd checkout, Matlab cannot find brainstorm.m | |
| - name: Set up Matlab | |
| uses: matlab-actions/setup-matlab@v1 | |
| with: | |
| release: ${{ env.MATLAB_VER }} | |
| # Get code to do the testing | |
| - name: Checkout 'bst-tests' in 'bst-tests' | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: brainstorm-tools/bst-tests | |
| ref: 'main' | |
| # TOKEN_BST_TEST is a PAT in secrets in brainstorm3 | |
| # TOKEN was create on rcassani account | |
| token: ${{ secrets.TOKEN_BST_TEST }} | |
| path: bst-tests | |
| # Keep script at same level as brainstorm.m | |
| - name: Create symbolic link for test_brainstorm.m | |
| run: ln -s $GITHUB_WORKSPACE/bst-tests/test_brainstorm.m $GITHUB_WORKSPACE/brainstorm3/test_brainstorm.m | |
| # Run testing | |
| - name: Run script | |
| uses: matlab-actions/run-command@v1 | |
| with: | |
| command: cd("brainstorm3"), brainstorm test_brainstorm.m ${{ github.event.inputs.testname }} ${{ github.event.inputs.bstusername }} local | |
| startup-options: -nodisplay | |
| # macOS job | |
| Run-MacOS: | |
| name: Run on macOS (12 Monterey) | |
| runs-on: macos-12 | |
| steps: | |
| # Get the Brainstorm code to test | |
| - name: Checkout 'brainstorm3' in 'brainstorm3' | |
| uses: actions/checkout@v3 | |
| with: | |
| path: brainstorm3 | |
| # Setting Matlab, if done after 2nd checkout, Matlab cannot find brainstorm.m | |
| - name: Set up Matlab | |
| uses: matlab-actions/setup-matlab@v1 | |
| with: | |
| release: ${{ env.MATLAB_VER }} | |
| # Get code to do the testing | |
| - name: Checkout 'bst-tests' in 'bst-tests' | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: brainstorm-tools/bst-tests | |
| ref: 'main' | |
| # TOKEN_BST_TEST is a PAT in secrets in brainstorm3 | |
| # TOKEN was create on rcassani account | |
| token: ${{ secrets.TOKEN_BST_TEST }} | |
| path: bst-tests | |
| # Keep script at same level as brainstorm.m | |
| - name: Create symbolic link for test_brainstorm.m | |
| run: ln -s $GITHUB_WORKSPACE/bst-tests/test_brainstorm.m $GITHUB_WORKSPACE/brainstorm3/test_brainstorm.m | |
| # Run testing | |
| - name: Run script | |
| uses: matlab-actions/run-command@v1 | |
| with: | |
| command: cd("brainstorm3"), brainstorm test_brainstorm.m ${{ github.event.inputs.testname }} ${{ github.event.inputs.bstusername }} local | |
| startup-options: -nodisplay | |
| # Windows job | |
| Run-Windows: | |
| name: Run on Windows (Server 2019) | |
| runs-on: windows-2019 | |
| steps: | |
| # Get the Brainstorm code to test | |
| - name: Checkout 'brainstorm3' in 'brainstorm3' | |
| uses: actions/checkout@v3 | |
| with: | |
| path: brainstorm3 | |
| # Setting Matlab, if done after 2nd checkout, Matlab cannot find brainstorm.m | |
| - name: Set up Matlab | |
| uses: matlab-actions/setup-matlab@v1 | |
| with: | |
| release: ${{ env.MATLAB_VER }} | |
| # Get code to do the testing | |
| - name: Checkout 'bst-tests' in 'bst-tests' | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: brainstorm-tools/bst-tests | |
| ref: 'main' | |
| # TOKEN_BST_TEST is a PAT in secrets in brainstorm3 | |
| # TOKEN was create on rcassani account | |
| token: ${{ secrets.TOKEN_BST_TEST }} | |
| path: bst-tests | |
| # Keep script at same level as brainstorm.m | |
| - name: Create symbolic link for test_brainstorm.m | |
| shell: cmd | |
| run: | | |
| mklink %GITHUB_WORKSPACE%\brainstorm3\test_brainstorm.m %GITHUB_WORKSPACE%\bst-tests\test_brainstorm.m | |
| pwd | |
| dir | |
| # Run testing | |
| - name: Run script | |
| uses: matlab-actions/run-command@v1 | |
| with: | |
| command: cd("brainstorm3"), brainstorm test_brainstorm.m ${{ github.event.inputs.testname }} ${{ github.event.inputs.bstusername }} local | |
| startup-options: -nodisplay |