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Run SplitBamByCell but specify OUTPUT_LIST or REPORT parameter where the program does not have write access.
Program can have significant run time, only to fail at the end of the process with
Exception in thread "main" htsjdk.samtools.SAMException: Error opening file for writing
Affected tool(s)
SplitBamByCell
Affected version(s)
Latest public release version [version?]
Expected behavior
SplitBamByCell should use IOUtil.assertFileIsWritable to validate all outputs before starting process.
Actual behavior
SplitBamByCell runs until finished, then fails to write files due to path or permissions issues.
The text was updated successfully, but these errors were encountered:
Instructions
Run SplitBamByCell but specify OUTPUT_LIST or REPORT parameter where the program does not have write access.
Program can have significant run time, only to fail at the end of the process with
Exception in thread "main" htsjdk.samtools.SAMException: Error opening file for writing
Affected tool(s)
SplitBamByCell
Affected version(s)
Expected behavior
SplitBamByCell should use IOUtil.assertFileIsWritable to validate all outputs before starting process.
Actual behavior
SplitBamByCell runs until finished, then fails to write files due to path or permissions issues.
The text was updated successfully, but these errors were encountered: