Skip to content

Issues: broadinstitute/Drop-seq

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

23 Open 95 Closed
23 Open 95 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

TagReadWithGeneFunction didn't work
#488 opened Jan 18, 2025 by PJChenCN
1
Error in R intallation instructions referencing release 3.0.0 but file 3.0.2
#486 opened Jan 14, 2025 by JosephLongworth
1 task
no output
#484 opened Nov 14, 2024 by akulan1
12
Questions on knee plot analysis and matrix construction
#467 opened Oct 10, 2024 by bulahwu
2
ERROR: Could not find one and only one picard.jar in deployment.
#450 opened Sep 4, 2024 by gabriella-quinn
1
Implement continuous integration for python code
#446 opened Aug 29, 2024 by alecw
@alecw
DonorAssignmentQC not emitting plotCommonDonorsFdrDistribution result
#441 opened Aug 8, 2024 by jamesnemesh
A Feature to use gene ID instead of gene names
#439 opened Aug 1, 2024 by WellSIM
1
Errors that occur with create_Drop-seq_reference_metadata.sh
#433 opened Jul 11, 2024 by daliziya
8
Dropulation execution errors
#422 opened May 29, 2024 by drneavin
20
DGE matrix with bimodal distributions of total counts
#415 opened May 4, 2024 by ccuriqueo
1
analysis for multiple runs per sample
#410 opened Apr 5, 2024 by shishuo16
7
CreateIntervalFiles
#358 opened Oct 18, 2023 by v-mahughes
1
Donor assignment validate inputs CELL_CONTAMINATION_ESTIMATE_FILE and ALLELE_FREQUENCY_ESTIMATE_FILE
#354 opened Sep 14, 2023 by jamesnemesh
1 task done
Dropulation doublet rate very high
#339 opened Jun 23, 2023 by terencewtli
8
ConvertToReflFlat skips many transcripts
#333 opened Mar 21, 2023 by auesro
1 of 2 tasks
14
Naming suggestion for outputs of DetectDoublets
#332 opened Mar 16, 2023 by ruochiz
Dropulation high doublet call rate
#321 opened Oct 12, 2022 by drneavin
9
GatherGeneGCLength breaks on transcript writing
#305 opened May 9, 2022 by jamesnemesh
1 task done
about the detectbeadsubstitutionerrors module!
#304 opened May 4, 2022 by 10KGenomics
2
GenerateSyntheticDoublets needs unit tests
#290 opened Jan 31, 2022 by jamesnemesh
SplitBamByCell doesn't validate outputs early enough
#226 opened Jan 24, 2021 by jamesnemesh
1 task done
Error when running ConvertToRefFlat with GTF for rat
#50 opened Oct 24, 2018 by jentiger82
9
ProTip! Follow long discussions with comments:>50.