Added outlier samples to test calls

broadinstitute · Aug 30, 2024 · 0c4fae2 · 0c4fae2
1 parent 7da11ee
commit 0c4fae2
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/inputs/values/dockers.json b/inputs/values/dockers.json
@@ -12,8 +12,8 @@
   "samtools_cloud_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/samtools-cloud:2024-01-24-v0.28.4-beta-9debd6d7",
   "sv_base_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-base:2024-01-24-v0.28.4-beta-9debd6d7",
   "sv_base_mini_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-base-mini:2024-01-24-v0.28.4-beta-9debd6d7",
-  "sv_pipeline_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-pipeline:2024-08-19-v0.28.5-beta-84a0627d",
-  "sv_pipeline_qc_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-pipeline:2024-08-19-v0.28.5-beta-84a0627d",
+  "sv_pipeline_docker": "us-central1-docker.pkg.dev/talkowski-training/kj-development/sv-pipeline:kj-44-outlier-sample-removal-7da11ee3cf51d0ad80b8e5483469f96b98f80e30",
+  "sv_pipeline_qc_docker": "us-central1-docker.pkg.dev/talkowski-training/kj-development/sv-pipeline:kj-44-outlier-sample-removal-7da11ee3cf51d0ad80b8e5483469f96b98f80e30",
   "wham_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/wham:2024-01-24-v0.28.4-beta-9debd6d7",
   "igv_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/igv:mw-xz-fixes-2-b1be6a9",
   "duphold_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/duphold:mw-xz-fixes-2-b1be6a9",
@@ -28,5 +28,5 @@
   "sv_utils_docker": "us.gcr.io/broad-dsde-methods/markw/sv-utils:mw-train-genotype-filtering-a9479501",
   "gq_recalibrator_docker": "us.gcr.io/broad-dsde-methods/markw/gatk:mw-tb-form-sv-filter-training-data-899360a",
   "str": "us.gcr.io/broad-dsde-methods/gatk-sv/str:2023-05-23-v0.27.3-beta-e537bdd6",
-  "denovo": "us.gcr.io/broad-dsde-methods/gatk-sv/denovo:2024-08-19-v0.28.5-beta-84a0627d"
+  "denovo": "us-central1-docker.pkg.dev/talkowski-training/kj-development/denovo:kj-44-outlier-sample-removal-7da11ee3cf51d0ad80b8e5483469f96b98f80e30"
 }