increase fam qc plots mem in wdl not jsons

broadinstitute · Jan 8, 2024 · 18efe4b · 18efe4b
1 parent dc2bb6a
commit 18efe4b
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Showing 3 changed files with 3 additions and 12 deletions.
diff --git a/inputs/templates/test/MainVcfQc/MainVcfQc.json.tmpl b/inputs/templates/test/MainVcfQc/MainVcfQc.json.tmpl
@@ -17,10 +17,5 @@
   "MainVcfQc.vcfs": [ {{ test_batch.clean_vcf | tojson }} ],
 
   "MainVcfQc.sv_per_shard": 2500,
-  "MainVcfQc.samples_per_shard": 600,
-
-  "MainVcfQc.runtime_override_plot_qc_per_family": {
-    "mem_gb": 15,
-    "disk_gb": 100
-  }
+  "MainVcfQc.samples_per_shard": 600
 }
diff --git a/inputs/templates/test/MainVcfQc/MainVcfQc.per_sample_benchmark.json.tmpl b/inputs/templates/test/MainVcfQc/MainVcfQc.per_sample_benchmark.json.tmpl
@@ -25,9 +25,5 @@
   "MainVcfQc.runtime_override_per_sample_benchmark_plot": {
     "mem_gb": 30,
     "disk_gb": 50
-  },
-  "MainVcfQc.runtime_override_plot_qc_per_family": {
-    "mem_gb": 15,
-    "disk_gb": 100
   }
 }
diff --git a/wdl/MainVcfQc.wdl b/wdl/MainVcfQc.wdl
@@ -529,8 +529,8 @@ task PlotQcPerFamily {
   }
   Int random_seed_ = select_first([random_seed, 0])
   RuntimeAttr runtime_default = object {
-    mem_gb: 7.75,
-    disk_gb: 50,
+    mem_gb: 15,
+    disk_gb: 100,
     cpu_cores: 1,
     preemptible_tries: 1,
     max_retries: 1,