Resolve additional comments

website/docs/execution/joint.md

@@ -86,9 +86,9 @@ AF annotation with external population callsets
 
 Extra workflows (Not part of canonical pipeline, but included for your convenience. May require manual configuration):
 * `MainVcfQc`: Generate detailed call set QC plots
-* `PlotSVCountsPerSample`: Plot SV counts per sample per SV type
-* `FilterOutlierSamples`: Filter outlier samples (in terms of SV counts) from a single VCF. Recommended to run 
-* `PlotSVCountsPerSample` beforehand (configured with the single VCF you want to filter) to enable IQR cutoff choice.
+* `PlotSVCountsPerSample`: Plot SV counts per sample per SV type. Recommended to run before `FilterOutlierSamples` 
+  (configured with the single VCF you want to filter) to enable IQR cutoff choice.
+* `FilterOutlierSamples`: Filter outlier samples (in terms of SV counts) from a single VCF.
 * `VisualizeCnvs`: Plot multi-sample depth profiles for CNVs
 
 For detailed instructions on running the pipeline in Terra, see [workflow instructions](#instructions) below.

website/docs/modules/genotype_batch.md

@@ -7,8 +7,8 @@ slug: gb
 
 [WDL source code](https://github.com/broadinstitute/gatk-sv/blob/main/wdl/GenotypeBatch.wdl)
 
-Genotypes a batch of samples across all variants in the cohort. Note that while the preceding step, 
-[MergeBatchSites](./msites), is a "cohort-level", genotyping is performed on one batch of samples at a time.
+Genotypes a batch of samples across all variants in the cohort. Note that while the preceding step 
+[MergeBatchSites](./msites) is a "cohort-level" module, genotyping is performed on one batch of samples at a time.
 
 In brief, genotyping is performed by first training variant metric cutoffs on sites with clear evidence signatures, 
 and then genotypes and genotype qualities are assigned based on parametric models tuned with these cutoffs. This is