Create tools for SV VCF cleaning #4977

Job	Run time
build and push gatk docker to artifacts	11m 53s
check if the environment has privileges	1s
Validate script WDLs using womtools	3m 29s
Validate generated WDLs using womtools	14m 32s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	25m 41s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	25m 46s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	25m 23s
WDL test RUN_M2_WDL on cromwell	16m 43s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	12m 22s
Java 17.0.6+10 build and test cloud	24m 6s
Java 17.0.6+10 build and test integration	28m 53s
Java 17.0.6+10 build and test unit	18m 22s
Java 17.0.6+10 test on docker integration	36m 11s
Java 17.0.6+10 test on docker unit	19m 10s
Java 17.0.6+10 test on docker variantcalling	27m 6s
Java 17.0.6+10 test on docker conda	27m 16s
	5h 16m 54s

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