Create tools for SV VCF cleaning #4999

Job	Run time
check if the environment has privileges	1s
build and push gatk docker to artifacts	11m 48s
Validate generated WDLs using womtools	13m 51s
Validate script WDLs using womtools	47s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	23m 12s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	26m 25s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	24m 51s
WDL test RUN_M2_WDL on cromwell	17m 4s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	12m 46s
Java 17.0.6+10 build and test cloud	15m 6s
Java 17.0.6+10 build and test integration	31m 54s
Java 17.0.6+10 build and test unit	17m 46s
Java 17.0.6+10 test on docker integration	33m 56s
Java 17.0.6+10 test on docker unit	20m 38s
Java 17.0.6+10 test on docker variantcalling	26m 26s
Java 17.0.6+10 test on docker conda	24m 48s
	5h 1m 19s

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