Small fixes to Calculate Precision and Sensitivity WDL [VS-1168] #4138

Job	Run time
Validate generated WDLs using womtools	13m 41s
check if the environment has privileges	1s
Validate script WDLs using womtools	1m 37s
build and push gatk docker to artifacts	24m 46s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	28m 53s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	29m 59s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	29m 13s
WDL test RUN_M2_WDL on cromwell	21m 44s
WDL test RUN_CNN_WDL on cromwell	21m 0s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	17m 35s
Java 17.0.6+10 build and test cloud	16m 10s
Java 17.0.6+10 build and test integration	34m 59s
Java 17.0.6+10 build and test unit	22m 57s
Java 17.0.6+10 test on docker integration	39m 5s
Java 17.0.6+10 test on docker unit	29m 26s
Java 17.0.6+10 test on docker variantcalling	33m 46s
Java 17.0.6+10 test on docker conda	30m 26s
	6h 35m 18s

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