test code

broadinstitute · May 6, 2024 · d7bc9f2 · d7bc9f2
1 parent 5349a0f
commit d7bc9f2
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/scripts/variantstore/wdl/GvsExtractCallset.wdl b/scripts/variantstore/wdl/GvsExtractCallset.wdl
@@ -379,6 +379,10 @@ task ExtractTask {
         exit 1
     fi
 
+    echo "MEM_SIZE: ${MEM_SIZE}, MEM_UNIT: ${MEM_UNIT}, memory_mb: ${memory_mb}, memory_gib: ~{memory_gib}"
+    echo "OutOfMemory" 1>&2
+    exit 1
+
     gatk --java-options "-Xmx${memory_mb}m" \
       ExtractCohortToVcf \
         --vet-ranges-extract-fq-table ~{fq_ranges_cohort_vet_extract_table} \